Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g01130 ATGATCATGGCACTAGAGGCACTTGCTTCTAATGATCTTTCCAACTTCATCATCTATGACACTATATCTGCTAGTCAAACCTACTCCCATGGATCTTCAGATACAAGCTTATTCGAGAAAAACGACGTCGACGACGGGATGATCCGTAACAGTTTGAGACCATTGGATCCTCATGGTACCTTGGATGGTTCTTCTTCCATGACACTAAGAAGCAGTACCAGAATGCCTGAACCCTTTGTTGGGAGATCGAATTCTGCAACGCAAAGTCGAAAGAGGTGGAGAAGGCCAAGGGTTTGCAAGAACAAAGAAGAAGCAGAGACTCAAAGGATGACACACATTGCCGTCGAACGAAACCGTCGCAAACAGATGAACGAGCATCTCGCTGTCTTACGCTCGCTGATGCCGGAGTCTTACACACAAAGGGGTGACCAAGCCTCTATAGTAGGTGGTGCTATAGAATTTGTGAAGGAGCTCGAGCAACTCCTTCAATCCCTTGAAGCCCACAAGCACCTTCTCCAACAACAACAACAACAACAACGAGCAACCCATGACAGCACAAACAACTTCATCCCTCCCCCTTTCGCGCAATTCTTCACCTGCCCCCAGTTTTCCTGGTCTCAGATCCCTGGTGAGTCGTATCGACTAGAGAATCGACCCGCCATTGCCGATATCGAAGTTACATTGATCGAAACCCACGCAAACCTCCGAATCCTCTCACGAAAGAGACCTCAACAGCTCTTCAAGATGGTGGCTGGGTTCCAAACCCTACGCCTCACCATCCTTCACCTCAATGTCACTTCCTTAGACCCATTGGTGCTCTACTCCTTCAGTACCAAGGTTGAGGAAGGATGCCACCTCACTTCAGTAGATGACATATCGGGCGCAGTACACCACATGCTCATAATAATTGAGGAGGAAGCTGCCCTAGGTTGA 933 0.4834 MIMALEALASNDLSNFIIYDTISASQTYSHGSSDTSLFEKNDVDDGMIRNSLRPLDPHGTLDGSSSMTLRSSTRMPEPFVGRSNSATQSRKRWRRPRVCKNKEEAETQRMTHIAVERNRRKQMNEHLAVLRSLMPESYTQRGDQASIVGGAIEFVKELEQLLQSLEAHKHLLQQQQQQQRATHDSTNNFIPPPFAQFFTCPQFSWSQIPGESYRLENRPAIADIEVTLIETHANLRILSRKRPQQLFKMVAGFQTLRLTILHLNVTSLDPLVLYSFSTKVEEGCHLTSVDDISGAVHHMLIIIEEEAALG* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g01130 310 PANTHER MAX DIMERIZATION, MAD 69 307 - -
Eupl08g01130 310 MobiDBLite consensus disorder prediction 61 87 - -
Eupl08g01130 310 Pfam Helix-loop-helix DNA-binding domain 108 159 IPR011598 GO:0046983
Eupl08g01130 310 CDD bHLH_AtFAMA_like 110 170 - -
Eupl08g01130 310 MobiDBLite consensus disorder prediction 52 106 - -
Eupl08g01130 310 SMART finulus 113 164 IPR011598 GO:0046983
Eupl08g01130 310 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 107 158 IPR011598 GO:0046983
Eupl08g01130 310 Coils Coil 155 178 - -
Eupl08g01130 310 Gene3D - 98 187 IPR036638 GO:0046983
Eupl08g01130 310 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 107 189 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g01130 Eupl-Chr8 31103324 31105982 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g01130 99 280 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 55.208 5.51e-61 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl08g01130 HLH 5.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g01130 - - nnu:104608765 370.933