Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g01129 ATGGCAACATCACTGGGAGCTAGAGCCTCAATCTCTTTAGTTTCTCCTTCTTCTTCTTCTTCGAAGCATCCCTGTTTCTCCAAATCTTCTCCCTCTATAAAACTCCAAATTTCTTTTTCTACCCCTACTCTTTCTCTCAATTCCCCCTTTTCTCATCTCCCGCCTCTTTCGAACAAGAAATTCGGGTTTGAAATATACTCCGCAGTTCAGGAAATCTCTGTAGAGGAAACCCAGGAGGAAAGCCTAGAAGATAAGAGGAAAAAGCTCTACGTCGTAAATCTTCCATGGAGTCTCTCTGTTGCCGATATTAAGAATCTCTTCGGCGAATGTGGCACTGTGAAAGATGTCGAGATTATAAAGCAGAAGGATGGGAGGAGTAGGGGATTCGCCTTCATTACAATGGATTCTGGAGATGGGGCTCGTTCTGTCATTGATAAATTTGATTCATATGAGTTGTCAGGAAGGATTATTAGGGTGGAGTTTGCAAAGAGATTGAGGAAACCATCTCCTCCTCCTCCTGCAGGATCTCCTTCTGTAGAGACACGCCATAAGCTCTATGTGTCCAATCTTGCATGGAAAGCAAGGTCTAGCCATCTCAGAGAATTATTCTCTGCCAGTTTTAATCTAGTTTCAGCTAGAGTGGTTTTCGACAGCCCTTCAGGAAGATCTGCTGGATACGGTTTTGTTTCTTTTTCCACGAAGGAGGAAGCAGAAGCTGCTCTTTCTGCCTTAGATGGGAAGGAATTGTTGGGCCGACCTATTCGTTTAAAATTTAGTGAGAAGAACATTGATGAATCTGGAAGTGAACCAGGTGAGGCAGACAATGCCAAAGGGCTAGAAGAGGTAGACAATGCCGTAGAGAAGCCTGAAGAGTCATAG 879 0.4391 MATSLGARASISLVSPSSSSSKHPCFSKSSPSIKLQISFSTPTLSLNSPFSHLPPLSNKKFGFEIYSAVQEISVEETQEESLEDKRKKLYVVNLPWSLSVADIKNLFGECGTVKDVEIIKQKDGRSRGFAFITMDSGDGARSVIDKFDSYELSGRIIRVEFAKRLRKPSPPPPAGSPSVETRHKLYVSNLAWKARSSHLRELFSASFNLVSARVVFDSPSGRSAGYGFVSFSTKEEAEAALSALDGKELLGRPIRLKFSEKNIDESGSEPGEADNAKGLEEVDNAVEKPEES* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g01129 292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 261 IPR000504 GO:0003723
Eupl08g01129 292 MobiDBLite consensus disorder prediction 260 292 - -
Eupl08g01129 292 FunFam Plastid-specific 30S ribosomal protein 2 166 269 - -
Eupl08g01129 292 CDD RRM_SF 89 160 - -
Eupl08g01129 292 PANTHER OS02G0815200 PROTEIN 17 260 - -
Eupl08g01129 292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 164 IPR000504 GO:0003723
Eupl08g01129 292 SUPERFAMILY RNA-binding domain, RBD 74 171 IPR035979 GO:0003676
Eupl08g01129 292 SMART rrm1_1 184 257 IPR000504 GO:0003723
Eupl08g01129 292 SMART rrm1_1 88 160 IPR000504 GO:0003723
Eupl08g01129 292 MobiDBLite consensus disorder prediction 1 25 - -
Eupl08g01129 292 SUPERFAMILY RNA-binding domain, RBD 169 263 IPR035979 GO:0003676
Eupl08g01129 292 Gene3D - 66 176 IPR012677 -
Eupl08g01129 292 Gene3D - 177 284 IPR012677 -
Eupl08g01129 292 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 255 IPR000504 GO:0003723
Eupl08g01129 292 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 157 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g01129 Eupl-Chr8 31064156 31083298 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g01129 85 264 Eukaryotic Initiation Factors Gene Family AT4G34110 31.282 4.16e-20 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g01129 - - nnu:104608768 346.28