Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g01117 ATGTCAACGGTGAAAGTACCTGGTCCTGGATTTGCTTCTCTTCTCGTGCCCATCAATCCATGGAGAATGCCTCCATGGATGGTGGTTCTCGTTGTTGTCACTTCAACATGTCTTGCTGGGATTGTAATTTACTTTATCTATTTTATTGGGAAGAAACCACAGCAGCAGCAGCCACCGGCGGCGGAGCCGGTGGAAGCAGAGAGGGTCATTGGAATCGACCCTCAGAGCTTAGAATCGTTACCAACATCTACATACAGAGGAGCGGATGAGCTCCCCTTTTCTGAAGACGAATGCCACATCTGCTTGGTGGAATTCGAAGAAGGAGATGCACTTCGCACGCTTCCCCAATGCAGGCATACATTCCACCAGGGATGTATCGGTTCGGCTCTTCGTATCCGAATGAAATGCCCCTTCTCTTGTCCCATCGAGCTCCCTGTTTGA 441 0.4989 MSTVKVPGPGFASLLVPINPWRMPPWMVVLVVVTSTCLAGIVIYFIYFIGKKPQQQQPPAAEPVEAERVIGIDPQSLESLPTSTYRGADELPFSEDECHICLVEFEEGDALRTLPQCRHTFHQGCIGSALRIRMKCPFSCPIELPV* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g01117 146 ProSiteProfiles Zinc finger RING-type profile. 98 137 IPR001841 -
Eupl08g01117 146 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 27 137 - -
Eupl08g01117 146 SUPERFAMILY RING/U-box 90 138 - -
Eupl08g01117 146 Pfam RING-like zinc finger 97 126 IPR001841 -
Eupl08g01117 146 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 144 IPR013083 -
Eupl08g01117 146 SMART ring_2 98 139 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g01117 Eupl-Chr8 30767324 30776290 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g01117 17 137 Rapid Response to Elicitors AT3G05200 35.115 2.05e-14 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g01117 - K10664 ppp:112282533 69.707