Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g01108 ATGGCTTCTGAAAGCTTCACCGACAAAAACGCTGTTTTCAGAAAGCTCAAAGCGAAGTCGGAGAACAAGATGTGTTTTGATTGCAATGCGAAGAATCCGACATGGGCGTCTGTTACGTATGGGATCTTCCTCTGCATCGACTGTTCCGCTGTTCATCGTAGCCTCGGGGTTCACATCAGCTTTGTTAGGTCTACAAATCTAGACTCATGGACTCCGGAGCAGCTGAAAATGATGAGTTTCGGGGGAAACAACCGCGCACAAGTTTTTTTTAAGCAGCATGGATGGACTGATGGAGGCAAAATTGAGGCAAAGTATACGTCAAGAGCTGCTGACTTATACAGGCAAATACTCTCAAAAGAAGTTGCTAAATTCTTTGCTGAAGAGCCCAGTTTGCCCTCAACTCCTGTAGTTTTGCAGTCAAAACATGTAGCTAATGGGCTTCCTGATGTCAAGGTTATGGAAGCTCCAAAGGAAAGTTCATGTGAAAGGAACGAAACTCCCGAAATTTCTGCTTCACCTAAAGCTTCTTCTCATACTGTTGTTACAAGTTCTGTTAAAAAGCCCTTAGGAGCAAAAAGAACTGGAAGTAAGACTGGAGGGCTTGGTGTCCGAAAGCTTACCACAAAGCCAAGTGAAAGTCTTTATGACCAGAAGCCAGAGGAACCAGCTCCTCCAGTTACCATCTCAGCTAATGCCACCACAACATTTGGCTCATCTTTTCCTTCTCGCTTTGAGTATGTAGAGAATGTCCAAACTACTGAAACTAGTTCTGGAGGCACACATGTGATTAATCATGTTTCCCCACCAAAGTCATCAAGCTTCTTTGCCGAATTCGGAATGGATAGCGGGTTTCAGAAGAAAGCTAGCTCTAGTTCCTCTAAAGTGCAGGTTCAAGAAACTGATGAAGCAAGGAAGAAATTCTCAAATGCAAAGTCTATTTCATCATCCCAATTTTTCGGGGATCAGAATAAAGCCAGGGACATGGAAGCTCAAGCCTCCTTGCAAAAGTTCTCGAGTTCAACAGCAATCTCTAGTGCTGATCTATTTGGTCACGATATGGATGATTCTCAACTTGACTTGACTGCAGCTGATCTCATCAACCGAATCTCTTTCCAGGCATCACAGGACATCTCTTCCCTCAAGAATATTGCAGGAGAGACCGGGAAGAAGCTCACTTCTCTGGCTTCCAGTTTCATAACAGATCTTCAGGATAGAATCCTCTGA 1224 0.4404 MASESFTDKNAVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWTPEQLKMMSFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAADLYRQILSKEVAKFFAEEPSLPSTPVVLQSKHVANGLPDVKVMEAPKESSCERNETPEISASPKASSHTVVTSSVKKPLGAKRTGSKTGGLGVRKLTTKPSESLYDQKPEEPAPPVTISANATTTFGSSFPSRFEYVENVQTTETSSGGTHVINHVSPPKSSSFFAEFGMDSGFQKKASSSSSKVQVQETDEARKKFSNAKSISSSQFFGDQNKARDMEAQASLQKFSSSTAISSADLFGHDMDDSQLDLTAADLINRISFQASQDISSLKNIAGETGKKLTSLASSFITDLQDRIL* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g01108 407 CDD ArfGap_ArfGap2_3_like 8 123 - -
Eupl08g01108 407 Gene3D Arf GTPase activating protein 1 133 IPR038508 -
Eupl08g01108 407 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Eupl08g01108 407 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Eupl08g01108 407 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Eupl08g01108 407 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 115 IPR001164 GO:0005096
Eupl08g01108 407 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Eupl08g01108 407 MobiDBLite consensus disorder prediction 155 204 - -
Eupl08g01108 407 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 4 407 - -
Eupl08g01108 407 SUPERFAMILY ArfGap/RecO-like zinc finger 11 126 IPR037278 -
Eupl08g01108 407 MobiDBLite consensus disorder prediction 165 184 - -
Eupl08g01108 407 MobiDBLite consensus disorder prediction 209 228 - -
Eupl08g01108 407 Pfam Putative GTPase activating protein for Arf 12 100 IPR001164 GO:0005096
Eupl08g01108 407 FunFam ADP-ribosylation factor GTPase-activating protein AGD10 1 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g01108 Eupl-Chr8 30618160 30639635 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g01108 5 83 C2H2 Transcription Factor Family AT3G07940 48.750 4.66e-20 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g01108 K12493 K11855 nnu:104608777 677.937