Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g01107 ATGACGGAATACCGCTTACCCACGATGAATCTCTGGACGGACGACAACGCATCGATGATGGAAGCTTTTATGGCTTCCGATCTCTCTCCTTTCAGTTGGCCTCCTTCGTCTTCTGCATCGACGACGACGACTGCCGTGACTGATCCTACCAGAACCCTAAACCAATCTCAGCCGTCGACGTTCTTCAATCAAGAGACCCTACAGCAGCGCCTCCAAGCCCTAATCGAGGGCGCTCGCGAGAGCTGGACCTACGCCATCTTCTGGCAATCCTCTGTCGATATTTCTGGGGCTTCTCTCCTTGGATGGGGAGACGGTTACTACAAAGGAGAAGAAGATAAGCTGAAACGAAAGATGACGTCATCGTCAATCGCAGAGCAGGAACACCGTAAAAAGGTTCTCCGGGAGCTCAATTCGTTGATCTCCGGTGCTCCTGGATCGATGGATGATGCCGTTGATGAAGAAGTTACCGACACCGAGTGGTTCTTCCTGGTTTCGATGACTCAGTCGTTCATCAACGGCGGTGGGCTTCCTGGTCAGGCGTTCTTCACTTCGAATCCTGTGTGGATTGCCGGGAGCGATAGGCTCGCGAGCTCGTCTTGCGAGCGGGCGCGGCAAGCGCAGGTGTTCGGGTTACAGACTTTGGTGTGTATACCTTCGGCTAACGGCGTGGTCGAATTAGGCTCGACTGAAATGATTTTCCAGAGCTCGGATCTGATGAATAAGGTTAGGGTTTTGTTCAATTTTAGTAATCCTGAAATTGGATCCTGGCCGTCGCAGACAGATCAGGGCGAGAACGATCCGTCGTCGCTCTGGATCTCAGATCCATCCGTGATCGAAATTAAGGACTCTGTTAACACAGCTCCTGCAAATTCTGCGCCCACAAATGTTCAAGAGATTTCCAAGTCAATTCACTTCGAAAACCCTAGCTTCACCGAATCAATCCATGTCCAGAACCAGCACCAGCAGCTTCAGCAGCACCAACACCAACACCAGCAGCAGCAGCAGCAGCAGCAGTCGCAGGGCTTCTTCACTAGAGAATTGAATTTCTCCGAATTCGGATTTGATGGAAGCAGCACCAGGAACGGTGGTACTTCGCAGACGTGTAAACCGGAATCAGGGGAGATCTTGAATTTCGGAGAGAGTAAGAGGAATTCAGGTAGTTCGAATGGCAATCTGTTCTCGAATCATTCGTTTGTTACGGATGAGAAGATGAAGAAGAGATCGGCTACATCGAGAGGTAGTAACGATGAAGGGATGCTCTCCTTCACATCTGGTGTGGTCTTGCCTTCTTCTGGTGTGGTGAAATCAAGTGTTGGAGCAGGAGATTCTGATCACTCTGATCTTGAAGCTTCGGTTCGAGAAGCTGAGAGTAGCAGAGTGGTGGACCCTGAGAAGCGACCCCGGAAGCGGGGAAGGAAACCTGCTAATGGCCGAGAAGAGCCTCTGAACCATGTCGAGGCTGAACGACAGAGGCGAGAGAAGCTCAATCAGAGATTCTACGCCCTCAGGGCAGTAGTCCCGAATGTCTCGAAGATGGACAAAGCCTCCCTTCTCGGCGACGCCATTGCCTACATCAATGAGCTTAGAACGAAGCTACAAACGACCGAATCAGATAAGGAGGGATTGCTGGCTCAAGTGGATTCCCTGAAAAAGGACTTAGCCAGTAAAGAATCTCGCTCTGGCTCAGTCCCACCCCCATCTGATCAAGATCTTAAGATCTTGAGTAATCTTGGAAGCAAGTCTTCGGAGTTGGATATCGATGTGAAGATACTTGGTTGGGAAGCAATGATAAGAATTCAGTGTAACAAGAAGAACCACCCGGCGGCGAGGCTGATGGCAGCTCTGAAAGAGCTCGATTTAGACGTGCATTATGCCAGTGTATCAGTAGTTAAGGATCTAATGATCCAACAAGCAACAGTCAAGATGTCGAGCCGAATTTACACTCAAGACCAGCTCAGGGTTGCCCTATCGTCGAAAGTTGCCGACACCCGATAA 1995 0.5033 MTEYRLPTMNLWTDDNASMMEAFMASDLSPFSWPPSSSASTTTTAVTDPTRTLNQSQPSTFFNQETLQQRLQALIEGARESWTYAIFWQSSVDISGASLLGWGDGYYKGEEDKLKRKMTSSSIAEQEHRKKVLRELNSLISGAPGSMDDAVDEEVTDTEWFFLVSMTQSFINGGGLPGQAFFTSNPVWIAGSDRLASSSCERARQAQVFGLQTLVCIPSANGVVELGSTEMIFQSSDLMNKVRVLFNFSNPEIGSWPSQTDQGENDPSSLWISDPSVIEIKDSVNTAPANSAPTNVQEISKSIHFENPSFTESIHVQNQHQQLQQHQHQHQQQQQQQQSQGFFTRELNFSEFGFDGSSTRNGGTSQTCKPESGEILNFGESKRNSGSSNGNLFSNHSFVTDEKMKKRSATSRGSNDEGMLSFTSGVVLPSSGVVKSSVGAGDSDHSDLEASVREAESSRVVDPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAIAYINELRTKLQTTESDKEGLLAQVDSLKKDLASKESRSGSVPPPSDQDLKILSNLGSKSSELDIDVKILGWEAMIRIQCNKKNHPAARLMAALKELDLDVHYASVSVVKDLMIQQATVKMSSRIYTQDQLRVALSSKVADTR* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g01107 664 FunFam Transcription factor bHLH13 472 546 - -
Eupl08g01107 664 MobiDBLite consensus disorder prediction 446 489 - -
Eupl08g01107 664 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 482 549 IPR036638 GO:0046983
Eupl08g01107 664 Pfam Helix-loop-helix DNA-binding domain 483 528 IPR011598 GO:0046983
Eupl08g01107 664 MobiDBLite consensus disorder prediction 353 419 - -
Eupl08g01107 664 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 67 246 IPR025610 -
Eupl08g01107 664 SMART finulus 485 534 IPR011598 GO:0046983
Eupl08g01107 664 MobiDBLite consensus disorder prediction 34 57 - -
Eupl08g01107 664 Coils Coil 316 336 - -
Eupl08g01107 664 Coils Coil 525 559 - -
Eupl08g01107 664 CDD bHLH_AtAIB_like 476 551 - -
Eupl08g01107 664 Gene3D - 471 559 IPR036638 GO:0046983
Eupl08g01107 664 PANTHER MYC 41 659 IPR045084 GO:0003700|GO:0006355
Eupl08g01107 664 MobiDBLite consensus disorder prediction 317 340 - -
Eupl08g01107 664 MobiDBLite consensus disorder prediction 353 398 - -
Eupl08g01107 664 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 479 528 IPR011598 GO:0046983
Eupl08g01107 664 MobiDBLite consensus disorder prediction 435 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g01107 Eupl-Chr8 30594585 30599602 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g01107 1 661 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 56.361 0.0 629
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl08g01107 bHLH-MYC_N 2.4e-56 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g01107 K13422 - nnu:104610347 916.376