Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g01088 ATGATGACGAAGCGCAAGGAACGGAACCTGATAGAGCTCTACGATGTCACCGAAACGCTCTTGGAACCGGAGATCACACCAGTCTTGAAAGGGAGTTGTCGCATACAAGGACCTGTGGACGAGACGGACCATTGCATTCAGACGAATACGGAGTTATCTCAATCTGAAAAAAGATTTGATAGGCATTCTGTGGCTGAGAAAGTTCGTATGAGAGCTGAATCTGGGACATGCAATGTGTGTGCTGCTCCTTGCTCATCTTGTATGCATTTTAATCGAGCTATGTCACGCATGGAGTTAAAAGCTGAGGATGAGTTTTCAGATGAAACCTCTAGGGAGAAGGTAGCTAGTCGGTGTTCTTTTAATGTTGCTGATGTGCTGCCTCCTTTTAAGAGCAGAGCATGCAAAGATCGGCAGCGTACAGCTAGTGAAACAAGTAACTTACTCAGCGCTAGTTCAAGTCACGACTCATTCTCTGAAAATGCAGAAAGTAAAGCAACTTTGAGGACCTTTGATGCATCTGAAGATGTTGAGATGCATCCAAAAGTGTTGTCAGGTGGAACTATTGCTGAAAATCAGGTTCTTTCCAACCCACAGAGTGTTGCTGGGCAGAGTGTAATTATTTCCTCAACTAGCTGTGTTGCATCTGGTGTGGGCCATAAAACCTTCTCAAGTCAGTATGAGGTGCAGAAAGGTTTAGAATGCCATGGTGATAACATTTCATGTGTTAGTGGAGCTAATGATGGAAATATGCCAGTTGGAGATCTTAATGTGGATGTTGACAGGAAGAATGTATCATGTAGTTCAGCTTCTGTTAGTAGTTTTCTTCAGGAAAGATTTGAGAAGGCATTTCATGTTCAAACGGATCCTGGTTGTCTGGATGATTTTCATTATGAAATAAAGGAGAGCCGCGATAAGTCTAGGAGTCCAAGTATGTTCACCAAAGAATCTATAGAGAAGAGTCCTACTATTAGTTCAGCAACTGCAGGTTTTCTCCACAAGTCAGACCCATCAGAGGTTCCTTCCTCGAAAGATATCTGTGCTGGCAATAATTCAGCAAAAGTACCGAGTTCGTATTCTCATTCTCGAAGTGGTAAATCACTTTTTCATAATGGAGATGCCAAGGATTTGGAAGAGAATTCTTGTTCTCACCACCAGGGCGAACCTTCTGAATGCTCCACAGAACATGTCGATTCGTCATTGGAGAAACTGGCAACATGCGATAATCTCAGTAGACAGAAATCAGCCACACATAACGGGGATACTGTCCTTCCAAAATTCGAAAATAATAAAGCTAATCTCACGCGGAATAGTTCTTCTGGGGCTTCAATGAAAATTCATCCATGCTTGGGAGCTGAAGTTGACATGGATACTGGGAATCCACCAGCCGAAGCTTTAAATTGTTCAGAGCTAAATGAACAAGCTGAGAAGTTGACTGCATCACCTGAGGTACCTGATCTGCAGGAACCTCCTTCGCAATCTCAGCCTGTTGATGAGAGCGATGGATCAGATATTGTGGAGGATGATGTCAAAGTGTGTGATATCTGTGGGGATGCAGGTCGGGAGGATATGCTTGCTATTTGTAGCAGGTGCAGTGATGGGGCAGAGCACACTTATTGCATGCAAATAATGGTGGATAAAGTTCCAGAAGGTGATTGGCTTTGTGAAGAATGCAAGATCAAGGAGGAAGCTGAGAACCAAAAGCAAGATAAATTTGGAACATTATTGGGGACTTTAAAAGCATCATGCATGAATGAAAAAAGTGAAAACTCTGGAGGTACCATTAACTCAAAGCCTTTACCCAAGTTGGATATCAAAGCACCAGATGTGGAGGCAACTAGAGCCAAGGTTGGGTCAAGTCCCCATTTCTCTTCTAAGAGACATTCAGACAATTCAGAAGTTGCTTCAGCAGCAAAAAGACCAGCTCTTGAAACCAATGCTGGATCACCAAAGCCATCCAGTCCCAGCAGAAAAGCTGCACTGACACGGGAAAGTTCTTTCAGGAACTTGGATAAGGGGAAAGTAAAGCCAGTCCATCAAATACATTCCTCGGGGGGTTCTTCTGCTAATAATTCTCAAGACACTGCAAACTCTCCTACTACTTCAGGTCATAACTCATCAAGGATCCAACCACGACTTCAGTCTCCTCGGGGTACTCTTTTAAAGTCAAATTCTTTCAACACCATAAACTCAAAACCAAAAGTCAAAATGGTACTAGAAGATCTTTCTCAAAAACAAAAATTGGCTAGGGAGCCTGCCACCAGTGACACAAAAAAGGAGGGACTTATCAGAACAATCAGCAAATCTTTGTCTTTCAGAACTGCCAGCCCAGGCCGTTCAAATTCTACTGAATCAAAACTTAAAGTTCACCCTTCTAATCTCTCTCGCATTGAGGATCTAAGAGGGTTAAAGCTGTCAAAAGAACGGAATTTAGTTGAAAGGAAAAATTCTTTCAAATTAGACCGCTCTCTGGTCAGTTCACCGACTGCTGGTTCTACTGTGTCTACTCCGAAGGCTGATCAAAAAATTGCTTCTCGCGGTGAAACCACGGCAATGCTTTCCTCTGCAACCAACAATCGTGATCTGAAGGCTGTTCAACCTGATGGAAAATCAAATATATCATCAAAAACAACCACTCTTCTTGCTAATAGAGGATCAGAAATTCCAAGTGTTTTGGCTGGATGTGGTGATGTCAAGAGGCAGTCTTCAGGTTTATCCCGTGGGATTGGAGCTCCATCTCTGAATGGAATATGCAATTCTGCTGAACAAAAGCCAAGTCAAATTAGTCCCAAGGATGAACTAACAGCAAGTTCTTCTTGGACTGCTGATAGAACATGTGGTAATCTTGATGCAGTTCTGCAAGATGGCTTACCTCAGTCTCGGGAATCCACCAATCAGGATGGGAAAGGCAGGGAGCCTTCTTTCAGTAGGTCAAGGCAGAGTGTTTCAGCTGGAGGTAGAAGTGTTCGCTGTCACAAATGTAAAGAAATGGGTCATGCTGCACAATTTTGCCCAATTGGTAGTCCTCGTGTTTCTGTTCTTGAACCATCTGCTGCAAGAAGTCAAGGGACGCGATGA 3075 0.4328 MMTKRKERNLIELYDVTETLLEPEITPVLKGSCRIQGPVDETDHCIQTNTELSQSEKRFDRHSVAEKVRMRAESGTCNVCAAPCSSCMHFNRAMSRMELKAEDEFSDETSREKVASRCSFNVADVLPPFKSRACKDRQRTASETSNLLSASSSHDSFSENAESKATLRTFDASEDVEMHPKVLSGGTIAENQVLSNPQSVAGQSVIISSTSCVASGVGHKTFSSQYEVQKGLECHGDNISCVSGANDGNMPVGDLNVDVDRKNVSCSSASVSSFLQERFEKAFHVQTDPGCLDDFHYEIKESRDKSRSPSMFTKESIEKSPTISSATAGFLHKSDPSEVPSSKDICAGNNSAKVPSSYSHSRSGKSLFHNGDAKDLEENSCSHHQGEPSECSTEHVDSSLEKLATCDNLSRQKSATHNGDTVLPKFENNKANLTRNSSSGASMKIHPCLGAEVDMDTGNPPAEALNCSELNEQAEKLTASPEVPDLQEPPSQSQPVDESDGSDIVEDDVKVCDICGDAGREDMLAICSRCSDGAEHTYCMQIMVDKVPEGDWLCEECKIKEEAENQKQDKFGTLLGTLKASCMNEKSENSGGTINSKPLPKLDIKAPDVEATRAKVGSSPHFSSKRHSDNSEVASAAKRPALETNAGSPKPSSPSRKAALTRESSFRNLDKGKVKPVHQIHSSGGSSANNSQDTANSPTTSGHNSSRIQPRLQSPRGTLLKSNSFNTINSKPKVKMVLEDLSQKQKLAREPATSDTKKEGLIRTISKSLSFRTASPGRSNSTESKLKVHPSNLSRIEDLRGLKLSKERNLVERKNSFKLDRSLVSSPTAGSTVSTPKADQKIASRGETTAMLSSATNNRDLKAVQPDGKSNISSKTTTLLANRGSEIPSVLAGCGDVKRQSSGLSRGIGAPSLNGICNSAEQKPSQISPKDELTASSSWTADRTCGNLDAVLQDGLPQSRESTNQDGKGREPSFSRSRQSVSAGGRSVRCHKCKEMGHAAQFCPIGSPRVSVLEPSAARSQGTR* 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g01088 1024 ProSiteProfiles Zinc finger PHD-type profile. 509 560 IPR019787 -
Eupl08g01088 1024 MobiDBLite consensus disorder prediction 1004 1024 - -
Eupl08g01088 1024 MobiDBLite consensus disorder prediction 915 939 - -
Eupl08g01088 1024 Pfam PHD-finger 511 559 IPR019787 -
Eupl08g01088 1024 MobiDBLite consensus disorder prediction 822 875 - -
Eupl08g01088 1024 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 441 572 IPR013083 -
Eupl08g01088 1024 MobiDBLite consensus disorder prediction 611 726 - -
Eupl08g01088 1024 MobiDBLite consensus disorder prediction 343 366 - -
Eupl08g01088 1024 MobiDBLite consensus disorder prediction 663 677 - -
Eupl08g01088 1024 PANTHER - 509 1008 - -
Eupl08g01088 1024 MobiDBLite consensus disorder prediction 646 662 - -
Eupl08g01088 1024 MobiDBLite consensus disorder prediction 474 503 - -
Eupl08g01088 1024 MobiDBLite consensus disorder prediction 411 443 - -
Eupl08g01088 1024 SMART PHD_3 511 558 IPR001965 -
Eupl08g01088 1024 SUPERFAMILY FYVE/PHD zinc finger 499 562 IPR011011 -
Eupl08g01088 1024 MobiDBLite consensus disorder prediction 680 726 - -
Eupl08g01088 1024 MobiDBLite consensus disorder prediction 485 499 - -
Eupl08g01088 1024 MobiDBLite consensus disorder prediction 953 988 - -
Eupl08g01088 1024 MobiDBLite consensus disorder prediction 313 331 - -
Eupl08g01088 1024 MobiDBLite consensus disorder prediction 367 396 - -
Eupl08g01088 1024 MobiDBLite consensus disorder prediction 303 396 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g01088 508 559 C2H2 Transcription Factor Family AT3G01460 36.538 6.57e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Eupl08g01088 PHD 7.1e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g01088 - - nnu:104606480 1104.35