Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g01083 ATGGCTGCAGACCTTGGCATATTCTCCTTGACCCAACTTCAAAAACTTGCTCAGGCTCAACAAGAACAAAATCCTAGCTTGACTTCTGGTTCGTGGATGTGGAACTCAAGGCGAACCCAAGAGGATGACGATTCGTGGGAGGTACGCGCATTCGCCGCTGATACTGGTAACATTATGGGCACCACATGGCCTCCTCGCTCCTACACTTGCACCTTCTGCAGGCGTGAATTCAGGTCAGCCCAAGCACTTGGTGGTCACATGAATGTGCACAGGCGTGACCGTGCTAGGCTCCGCCAATCGCCACCTGCGTTGACTGCCGACCCCTCTTCATCTTCCACTTCGACATCTACTCTCATATTCCCATCTCAAGAATTCGTTGCGAATGGTGGCTTATGCCTTCTCTACCCTTTACCTAACCCTAGCAGTGTTTTCACATCTACATCCATAAATGGGTGTATGGAGAGTAATCCCTCTACACTTCTTTCTATCTCACCTTATCAGACGAATAACATGATATCAACTTGCCCACCTTCAGTTAATTTTCCAGTGGAAACAAGCATCCATGCTTCTCTTTGTCACCCCAGCAAAGTTCAACCTAGTGCGTCTATCGATAATTATAACGACGACGACGACGACGATGATAACCACAATAGCAACAGCAAAGAATTCGTGGGAGAGCTGGATCTTGAGCTTCGACTTGGATCAAGGCCCACGCAGTAA 720 0.4833 MAADLGIFSLTQLQKLAQAQQEQNPSLTSGSWMWNSRRTQEDDDSWEVRAFAADTGNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLRQSPPALTADPSSSSTSTSTLIFPSQEFVANGGLCLLYPLPNPSSVFTSTSINGCMESNPSTLLSISPYQTNNMISTCPPSVNFPVETSIHASLCHPSKVQPSASIDNYNDDDDDDDNHNSNSKEFVGELDLELRLGSRPTQ* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g01083 239 MobiDBLite consensus disorder prediction 214 229 - -
Eupl08g01083 239 MobiDBLite consensus disorder prediction 21 36 - -
Eupl08g01083 239 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 95 IPR013087 -
Eupl08g01083 239 PANTHER OS07G0101800 PROTEIN 40 237 - -
Eupl08g01083 239 MobiDBLite consensus disorder prediction 21 40 - -
Eupl08g01083 239 MobiDBLite consensus disorder prediction 95 115 - -
Eupl08g01083 239 MobiDBLite consensus disorder prediction 199 239 - -
Eupl08g01083 239 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Eupl08g01083 239 Pfam C2H2-type zinc finger 68 92 - -
Eupl08g01083 239 SUPERFAMILY beta-beta-alpha zinc fingers 65 94 IPR036236 -
Eupl08g01083 239 Gene3D Classic Zinc Finger 59 117 - -
Eupl08g01083 239 SMART c2h2final6 68 90 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g01083 Eupl-Chr8 29898828 29899547 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g01083 27 237 C2H2 Transcription Factor Family AT4G17810 40.092 5.60e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl08g01083 zf-C2H2_6 5e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g01083 - - nnu:104606473 290.812