Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g01055 ATGGAGATGGAGAGGAAACCAGATCCATCCATGGAAATTCCTCTATATTTCAGGTGCCCCATTTCAATGGAGGTCATGAATTACCCTGTAACCATAACGACAGGGGTCACGTACGAAAAGAAGAACATAGAGAAATGGTTCTTCACATACAAGAAGAAAACATGTCCCGCGACAATGCAAAGCCTCAAGAACTTCGATCTAACCCCGAATCACACACTCAAGCGTCTCATACTCGCATGGCAAGAACGAGAATCTCAATCTAGTTCATCGTCGCCGCCTTCATCGATCAAGCACGATGAGTTGGTATCACTATTGACGACAATCGAATTGACGCCGTTCAAGGTAAGTTCGTTAAAGAAACTCCGGTCAATTATCGAAATGGGCGATGAGATCAGAGCGGATTTCGTTCAATCGGGAGGTATCGAGGTACTTGGCCGCATAATTGTTCAAATTCTACTCGAAAGTTCTGATTTCATTACATTTCGAGCTTGTGAAGAGGCTTTGGGTATCTTATACCAACTCCCATTATCCGACGAGGCGTCAATTGAGTTGTTATCGAAGCCCGAATGCATGAAGTCCATGGCAATCATGCTCCAACGTGGAAGCGCCGAGGCCCGATTTCACACTGTTACGTTATTTAGAAAAATGGCTAAAGTCGAGTATAATTGGAGCTGGGTTGTACAAGATCAAGGCATAGATCTCTTTACATCCTTGTTAGAACTTTTATCGGACGAAATCTGCACAAAGGCAAGTTCATGTGCCTTGGATATTCTGATCGAGATCTTGGGGTCGTCAAAGAAGAATCGATTGAAAGCGATTGAAGCGGGTGCAGTCTGCATCCTTATCGAGCTTCTCCCCGACTCAACCCGATCGAAATGTGAGAAGATGTTGTTACTAATCAAATTGCTATGCGAATGCGCGGAAGGAAGATTAGCCTTAGTAGATCACAGGTTGGGGATCGCCGTCATCACGAAGAAGATATATCGTGTTTCTGATCTTGCAACTAAAATTGGGGTTAAGATCTTGTGGTCGATTAGTAGTTTTCATCCCACAGAGAAGGTCATTGAGGATATGTTGATGTTTGGATCCGTAAAGAAGCTGCTCAGCTTGTTGCATATCGAAGGTCAATCGTCGACGAAGGATAAGGCGGTGAAGATCATCAAATTGCATGGGAATTCATGGAGGCAATACCCTTGTTTCCCTCGTGAGTTGAATGATTATTTGAGATTAATGCATGATTCAATATAA 1248 0.4351 MEMERKPDPSMEIPLYFRCPISMEVMNYPVTITTGVTYEKKNIEKWFFTYKKKTCPATMQSLKNFDLTPNHTLKRLILAWQERESQSSSSSPPSSIKHDELVSLLTTIELTPFKVSSLKKLRSIIEMGDEIRADFVQSGGIEVLGRIIVQILLESSDFITFRACEEALGILYQLPLSDEASIELLSKPECMKSMAIMLQRGSAEARFHTVTLFRKMAKVEYNWSWVVQDQGIDLFTSLLELLSDEICTKASSCALDILIEILGSSKKNRLKAIEAGAVCILIELLPDSTRSKCEKMLLLIKLLCECAEGRLALVDHRLGIAVITKKIYRVSDLATKIGVKILWSISSFHPTEKVIEDMLMFGSVKKLLSLLHIEGQSSTKDKAVKIIKLHGNSWRQYPCFPRELNDYLRLMHDSI* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g01055 415 PANTHER WDSAM1 PROTEIN 11 401 IPR045185 GO:0061630
Eupl08g01055 415 ProSiteProfiles U-box domain profile. 12 87 IPR003613 GO:0004842|GO:0016567
Eupl08g01055 415 SUPERFAMILY ARM repeat 100 377 IPR016024 -
Eupl08g01055 415 Gene3D - 95 393 IPR011989 -
Eupl08g01055 415 SUPERFAMILY RING/U-box 8 85 - -
Eupl08g01055 415 SMART Ubox_2 16 80 IPR003613 GO:0004842|GO:0016567
Eupl08g01055 415 Pfam U-box domain 13 84 IPR003613 GO:0004842|GO:0016567
Eupl08g01055 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 94 IPR013083 -
Eupl08g01055 415 CDD RING-Ubox_PUB 14 67 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g01055 Eupl-Chr8 29298557 29299971 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g01055 8 404 U-box Gene Family AT2G35930 34.314 2.09e-72 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g01055 - - psom:113323869 645.195