Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g01054 ATGGGTTGCACTGTAAGAGAAAAGCATCTCCGAAACACTCATCGGAAACCTCGATCAATAAAACCCGATTTTGATAATACCCCATCTGACAGAACTGGGGTCCCCTCTTCCCTCCCTGAATTGGCTCTGAAACCATCGGAGCATGGCCCAGGTGCCGAGGAAGGTGAACAGAACCGAAACCCTAATTTTGATGAGACTGGTTGGGGGTACTGTACAGAAGACCAATTAGAAGGATATCTGTTAAAGAATCTTGAATTCCTATATAACGAGGCGATCTCCAAGCTCGTAGCGCTTGGGTATGACGAAGACGTTGCCTTGAAAGCGATATTGCACAATGGGCATTGTTATGGAAGCATGGATGTTCTCACGAACATCCTGCATAACTCGCTCACTTATCTAAACAGTAATAATGTGAATTCTGAGGAATCGGAATTGGTTTTCGGGGATCTGAGGCAGTTGGAGGAGTACTCGCTGGCAGGCATGGTCTGCTTGCTCCAGCAGGTTCGGCCCCATTTGAGTAAAGGAGACGCCATGTGGTGTCTCCTCATGAGCGATCTTCATGTGGGCCGGGCAAGCACCATTGAAGTCCCAGTCCTGCCTTCCTCCAGTAATGGTGGTAGTCCTACTGGTGGCAGTAGTGAAACTGTAAATAGCAACCCAATTGGGGTTGCCCCTGGGATATGTAAGTTTCACGGTGGTTGGGGATTTGGAGGTGGAGGAGCTCCTGATTTCTCCATGAATGGGACATTCTCATCGTCATTTGATACTACATTGTTGAGAGACATCGAATGTCCAAAGAGGTTCAATCTCACACCTTCAATGAAGTCCCTGTTGCAAAGGAATGTCGCAATGTTTGCGGCAGGGTTTCGGGCAAACTCGAAAGTGGGGGTAGTACAGTCTCAGGCCTGTCCGAGCTCTTTGTCGAGCAGTGGGTCGCCCACGGGGATTGCATTGGGATCTGAAATTCCATCAGAGAAGTACGAGGAACCCCGGGATTCTCAGAACTCGGATGTGGTGAGCTCAGTGTTGAGCAGCTTGGGTAACTTGAGTCTTGACGAGAAACCGGATGGTGGGGCAGTTGATCAGAAGAATGAAATGATCTTAAATCTTATCCATCAGATTAGGGACCTTGAGGGACTGTTGAAAGAGCGGAAGGAGTGGGCTGACCAGAAAGCTATGCAAGCTGCTAGAAAGCTCAGCCATGATCTCACAGAGCTCAGGATGTTAAGAATGGAGAGGGAGGAGACCCAGAGGCTGAAGAAGGGCAAACAGGCCCTGGAGGACACCACCATGAAGAGGCTCTCAGAGATGGAAAATGCTTTGAGGAAGGCAAGCGGTCAAGTTGACCGTGCAAATGCAGCTGTGAGACGGCTTGAGACTGAGAATGCTGAGATCAGGGCAGAGATGGAAGCTTCCAAGCTGAGCGCGTCAGAGTCTGTTACAACCTGTTTGGAGGTTGCGAAGAGGGAGAAAAAGTGTCTCAAGAGGCTTCAGGCTTGGGAGAAACAGAAAACTAAGTTGCAGGAGGAGGTTGCAGCGGAGAAACAGAAGATTGCCCAGTTACGACAACAGTTGCTTCTTGTCAAGGAGGCTCAGAAGGAAACTGAGGTAAAATGGAGGCAGGAACTGAAGGCTAAGGAGCTGGCCATTGCACAGGTGGAGGAGGAACGAAGATCCAAGGAAGCAACCGAGGTGAATGTTAAAAGAAAGCAGGAAGCTTTGCGCCGCAAGATAGAGATAGACTTCCAGCGCCATAAAGATGACATCCAAAGACTGGAACAGGAACTCTCCCGTCTCAAAGCATCTGTAGAATCCACTCAGCAAAATTACACATCAAATGCTTTGTGCACAGGAGACTCTGAGGTGGCAAAAACGTTGAAAGAAACAAATGCGAGGATGCTTCATGAGTTAAATAAATTGCAAGATACTTCTGAGAAAGAAGTGAACTATGACAGGGAATGCTTAATATGCGTGAAAGACGAAGTTTCGGTTGTTTTCCTGCCTTGTGCCCACCAAGTTCTGTGTGCCAATTGCAATGAGGATTATGGAAAGAAGGCTAAAGCTAGTTGCCCATGTTGCCGGGTCCAGATTGAACAGAGAATCCATGTTTATGGTGCAAGCTCGTAG 2127 0.4828 MGCTVREKHLRNTHRKPRSIKPDFDNTPSDRTGVPSSLPELALKPSEHGPGAEEGEQNRNPNFDETGWGYCTEDQLEGYLLKNLEFLYNEAISKLVALGYDEDVALKAILHNGHCYGSMDVLTNILHNSLTYLNSNNVNSEESELVFGDLRQLEEYSLAGMVCLLQQVRPHLSKGDAMWCLLMSDLHVGRASTIEVPVLPSSSNGGSPTGGSSETVNSNPIGVAPGICKFHGGWGFGGGGAPDFSMNGTFSSSFDTTLLRDIECPKRFNLTPSMKSLLQRNVAMFAAGFRANSKVGVVQSQACPSSLSSSGSPTGIALGSEIPSEKYEEPRDSQNSDVVSSVLSSLGNLSLDEKPDGGAVDQKNEMILNLIHQIRDLEGLLKERKEWADQKAMQAARKLSHDLTELRMLRMEREETQRLKKGKQALEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSASESVTTCLEVAKREKKCLKRLQAWEKQKTKLQEEVAAEKQKIAQLRQQLLLVKEAQKETEVKWRQELKAKELAIAQVEEERRSKEATEVNVKRKQEALRRKIEIDFQRHKDDIQRLEQELSRLKASVESTQQNYTSNALCTGDSEVAKTLKETNARMLHELNKLQDTSEKEVNYDRECLICVKDEVSVVFLPCAHQVLCANCNEDYGKKAKASCPCCRVQIEQRIHVYGASS* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g01054 708 Coils Coil 575 609 - -
Eupl08g01054 708 Pfam Family of unknown function (DUF6592) 83 191 IPR046527 -
Eupl08g01054 708 Coils Coil 536 573 - -
Eupl08g01054 708 MobiDBLite consensus disorder prediction 1 66 - -
Eupl08g01054 708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 639 705 IPR013083 -
Eupl08g01054 708 SUPERFAMILY RING/U-box 644 700 - -
Eupl08g01054 708 Coils Coil 623 643 - -
Eupl08g01054 708 ProSiteProfiles Zinc finger RING-type profile. 654 694 IPR001841 -
Eupl08g01054 708 PANTHER OS05G0141500 PROTEIN 1 703 IPR046934 -
Eupl08g01054 708 Pfam Zinc finger, C3HC4 type (RING finger) 651 699 - -
Eupl08g01054 708 Coils Coil 490 531 - -
Eupl08g01054 708 Coils Coil 434 475 - -
Eupl08g01054 708 CDD RING-HC_MIP1-like 649 703 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g01054 Eupl-Chr8 29279334 29283339 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g01054 636 704 C3H Transcription Factor Family AT1G73950 42.857 6.73e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g01054 - - nnu:104610386 988.023