Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g01049 ATGGGAAGCGGTTTCTCGCGACTCTGCCCATGCTTCAGGTCGGCCAAAAAAAACAACCAAGCGGATTTCATCTTCACGGCGTCAGAGCCGTTAGACGAAACCCTAGGCCACTCCTTCTGTTACGTCCGTTCCTCAGCTCGCTTTATCTCTCCTTCCCACTCCGACCGTCTATCTCCATCCCAATCCCTCCGTCTCTCTCCCTCTCATGAACCCGCCTTGAAAACTAGACCTGGTGTCGCCGAAACCGCTTTCAAGTCCATCTCCGGCGCTTCTGTCAGCGCCAACACCTCAACTCCCAGAACTGTCATCCAACATGATCATATTTACGATGATGCCACTGACTGTGTTGGTAGTACTAACACCAAGTCCAGTTTCATCAATGGTTTTGAGAGCACCTCCTCCTTTAGTGCTCAGCCGTTGCAGCCTATCCCCCGTGGTGATGCGTCAGGTCCGATTGAGCGTGGGTTCTTCATGTCGGGACCGATCGAACGCGGTGCCCTCTCTGGACCGCTTGATGGGAATACCGCTTCTGATCATGGGCAACTCCATTTTTCAGCTCCGCTCAATGGTATCTACATAAAAAAGAAGCGGAAGAAGGGGTTTTCGGGAATTCGGAAGGCGTTTTACCGGAACCTCTCGGAGAAGAAGCGGCCTTGGGTTGTGCCGGTTCTTAATTTTGTCGGCCGGAAGGACGGTTCGACCACAACTCATGGTGACGATTCGGAGGTGAAAAATGAGAACAATGTTCAGTGGGCTCTTGGGAAGGCTGGGGAGGATCGGGTTCACGTCGTCGTGTCTGAAGAACACGGGTGGCTCTTCGTCGGGATTTATGATGGTTTCAATGGCCCCGATGCTCCGGAATTCTTGATGGGTAATCTCTACCGTGCAGTTTTTAATGAGCTTGAAGGGTTGTTTTGGGATGTTGAGGGAGATTGCCCAATTGTTATTGGAGAAAAGGGTAGGGATGAAATTCAAGAAAATGTAGGGCGTGTGGAAGGAACAAACCCGTCCACCGAGAATTGCGGTGGTGCAGATGCGCAAAATGATGGAGAAGCGTTGGAGGGTTGTAAAAATTCCAATCCTCCGCCTTTGAATTCTGGGTCAGTGAAGAGAGTGACGTTTCAGCCAGAGTCGACGGGATTAAGAAGAGGGAAGCCTCTTTGGGAATTTCTTGCTGAGGATGACCCAGATGATGGACTTGATCTTTCGGGTTCGCAGCGGTTTGCATTTTCGGTTGACGATGCGCTTCGTGTCAGTAATGTAGGTTCCATTGTGAGGAGACGGTCTCTACTGTTGTCAAAGCTGAAATATGGGTTCTCCAAGCATAAGGAGGGGCAGGGTCACAGCAGGAGGTTATTTCCTTGGAGATACGATTGGGAGGATAAGGAGAAAACTGAAACGGAGAACAGAGCCGGGGAGACATCTTGTCGGAGCTTTAAGAAACGTCGAATTGGTCCCATTGATTCTGAGTTGGTTTTGAAGGCTCTATCGGGAGCTCTGGAAGTTGCTGAGCTTGCATACCTGGAAATGACAGACCAGGTTCTTGACCGGAATCCGGAGCTGGCACTGATGGGTTCGTGTTTGTTAGTTGTGCTGATGAGAGATGAGGACGTGTATGTGATGAACGTGGGTGATAGTCGTGCTATCGTTGCACAATATCAACCGCAAGCAATTAATTCTGTTATGAAGCCGACTGGAAGAGGGAAAAGTGGGTCAGACATGGAGGGTATTGTTGAAGAGTCCACTGGATTTGGTGAGGGACCAAATCCAGTAGCGATCGAGGCCACTGCTCAAACAATGAGGTTGACTGCATTACAGCTGTCCACCGATCACAGTACAAGCATTGAAGAAGAAGTCCTCAGAATCAAGCAAGAACACCCAGATGACAACCAATGTATTGTCAATGATAGGGTGAAAGGTCGTCTTAAGGTTACCAGAGCATTTGGGGCTGGATTCCTCAAGCAGCCCAAGTGGAATAATGCATTACTGGAAATGTTTAGGAACGAGTATATTGGTACTGCACCGTACATATCCTGTTCTCCTTCTCTTTGTCACCATAAACTCGGTCCAAGAGATCAGTTTTTGGTTCTCTCGTCGGATGGTTTATATCAATATTTTAGCAATCAAGAAGTGGTTTCTTATGTTGAAAGTTTCATGGAGAAGTTTCCAGATGGAGACCCTGCACAGCACTTAATTGAGGAGCTACTTTATCGTGCAGCCAAGAAAGCTGGAATGGATTTCCATGAATTACTAGACATTCCTCAAGGAGACCGCAGAAAGTACCATGACGATGTTACAGTTATGGTGATATCACTTGAAGGAAGAATTTGGAAGTCATCAGGAAAGTACTTGTGA 2355 0.4824 MGSGFSRLCPCFRSAKKNNQADFIFTASEPLDETLGHSFCYVRSSARFISPSHSDRLSPSQSLRLSPSHEPALKTRPGVAETAFKSISGASVSANTSTPRTVIQHDHIYDDATDCVGSTNTKSSFINGFESTSSFSAQPLQPIPRGDASGPIERGFFMSGPIERGALSGPLDGNTASDHGQLHFSAPLNGIYIKKKRKKGFSGIRKAFYRNLSEKKRPWVVPVLNFVGRKDGSTTTHGDDSEVKNENNVQWALGKAGEDRVHVVVSEEHGWLFVGIYDGFNGPDAPEFLMGNLYRAVFNELEGLFWDVEGDCPIVIGEKGRDEIQENVGRVEGTNPSTENCGGADAQNDGEALEGCKNSNPPPLNSGSVKRVTFQPESTGLRRGKPLWEFLAEDDPDDGLDLSGSQRFAFSVDDALRVSNVGSIVRRRSLLLSKLKYGFSKHKEGQGHSRRLFPWRYDWEDKEKTETENRAGETSCRSFKKRRIGPIDSELVLKALSGALEVAELAYLEMTDQVLDRNPELALMGSCLLVVLMRDEDVYVMNVGDSRAIVAQYQPQAINSVMKPTGRGKSGSDMEGIVEESTGFGEGPNPVAIEATAQTMRLTALQLSTDHSTSIEEEVLRIKQEHPDDNQCIVNDRVKGRLKVTRAFGAGFLKQPKWNNALLEMFRNEYIGTAPYISCSPSLCHHKLGPRDQFLVLSSDGLYQYFSNQEVVSYVESFMEKFPDGDPAQHLIEELLYRAAKKAGMDFHELLDIPQGDRRKYHDDVTVMVISLEGRIWKSSGKYL* 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g01049 784 SMART PP2C_4 242 770 IPR001932 -
Eupl08g01049 784 Pfam Protein phosphatase 2C 506 554 IPR001932 -
Eupl08g01049 784 Pfam Protein phosphatase 2C 606 739 IPR001932 -
Eupl08g01049 784 ProSiteProfiles PPM-type phosphatase domain profile. 241 772 IPR001932 -
Eupl08g01049 784 Gene3D - 428 779 IPR036457 -
Eupl08g01049 784 CDD PP2Cc 488 772 IPR001932 -
Eupl08g01049 784 PANTHER PROTEIN PHOSPHATASE 2C 241 771 IPR015655 GO:0004722|GO:0006470
Eupl08g01049 784 MobiDBLite consensus disorder prediction 52 68 - -
Eupl08g01049 784 Gene3D - 228 360 IPR036457 -
Eupl08g01049 784 MobiDBLite consensus disorder prediction 52 77 - -
Eupl08g01049 784 SUPERFAMILY PP2C-like 255 773 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g01049 Eupl-Chr8 29186039 29200063 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g01049 1 784 PP2C-type Phosphatase Gene Family AT2G35350 55.122 0.0 780
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g01049 - - nnu:104606456 1203.35