Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g01036 ATGGTTGATTCCAACAATGATAATGAGGGTGAAAACTCTATGCCACTAACAAACGGTGGTGAAGCCACAGCATCTAATGCAGTGTGCCCAGTGAAGGAGAGGTGTTGGGATCAAAGAGAAGCCCTGCCAGGGGAGCCTCGCTGTATTATCTGTGGCCGATATGGTGAGTATATCTGTGATGAGACGGATGACGATATTTGCAGCATGGAATGTAAAAGGACTCTCTTGGGTAGAGTTTCCAAGTCCCAGAAGCCAGACCGTCGTCCACCTCCTATAAGATTATCTGTTTCTGATGAATGCTTTTATGTTAGAGATGGTGATGATAAACCAAGAACTCAATCTTTTACCAGCAACCAGATCGATTCACTTAGGAGTAAAACTGATATCCGAGTTAAAGGAGACTCTGTTCCACCACCCATCTTGTCATTCTCTTCTTGCAATCTTCCTCAGAAGCTCCAACAAAATTTAGAAGCTGTAGGATATGAAATACCCACCCCTGTCCAAATGCAAGCCATTCCAGCTGCTTTGATTGGAAAAAACTTGCTTGTTTCAGCTGATACGGGCTCGGGTAAAACAGCTTCCTTTCTAGTTCCTATAGTTTCTCGCTGTGCAAATTTTCGTTGTGATAACCCCTCAGATCAGAAGAAGCCCTTAGCAATGGTTCTAGCACCGACTAGAGAGCTTTGTGTGCAGGTGGAGGAACAGGCTAAGCTACTTGGAAAGGGTCTGCCCTTCAAAACTGCACTTGTGGTGGGTGGTGATGCCATGGCTGGACAAATATACCGCATTCAGCAGGGGGTAGAATTGATTGTTGGAACTCCTGGCAGGCTCATTGATCTTTTAACCAAGCATGACATCAAACTGGATGAGGTTTCAGTTCTGGTTTTGGATGAGGTGGACTGCATGCTTCAAAGAGGTTTCCGAGATCAGGTAATGCAGGTTTTTCAAGCTCTTTTCAAACCTCAAATATTGATGTTTTCGGCAACAATTCCTCCAGAGGTGGAGAAGATGGCGAAGTCAATGGCTAAAGATCTGATCTTTGTCTCTGCTGGGAAGCCAAACAGGCCAAACGGATCTGTGAAGCAGGTAGTTATCTGGGTGGAATCGAAACAGAAGAAGCAGAAGCTCTTTGAGATTTTAATGAGCAAGCATCATTTTAAGCCTCCTGTTGTGGTATTTGTGGGTTCAAGGCTTGGAGCCGATCTCCTTTCTGAAGCGATCACAGTTACGACTGGGATGAAAGCTCTATCAATCCACGGGGAGAAGCCTATGATGGAGAGGAGGGAGACCCTGAGGTTGTTCTTAGCGGGAGAGATTTCCGTGATTGTAGCCACAGGGGTTCTAGGACGAGGCGTCGATCTCTTGAGAGTGAGGCAAGTGATTGTGTTTGACATGCCGAAATCCATCGAGGAGTACATCCATCAGATTGGGAGGGCCTCCATATTGGGAGAGGAGGGGACAGCAATTGTGCTTTTGAATGAAGAGAGCAAGAATCTGTTCCCAGAGTTTGTTGATGTTCTGAAATCATCGGGAGCTGTTGTTCCTCGGGAGCTTGCTAATTCACGATACACAACTTCTTACTCTGCTTTCAAGGGACAGAAGAAAAGGAAGCATGGTTTTTGA 1623 0.4572 MVDSNNDNEGENSMPLTNGGEATASNAVCPVKERCWDQREALPGEPRCIICGRYGEYICDETDDDICSMECKRTLLGRVSKSQKPDRRPPPIRLSVSDECFYVRDGDDKPRTQSFTSNQIDSLRSKTDIRVKGDSVPPPILSFSSCNLPQKLQQNLEAVGYEIPTPVQMQAIPAALIGKNLLVSADTGSGKTASFLVPIVSRCANFRCDNPSDQKKPLAMVLAPTRELCVQVEEQAKLLGKGLPFKTALVVGGDAMAGQIYRIQQGVELIVGTPGRLIDLLTKHDIKLDEVSVLVLDEVDCMLQRGFRDQVMQVFQALFKPQILMFSATIPPEVEKMAKSMAKDLIFVSAGKPNRPNGSVKQVVIWVESKQKKQKLFEILMSKHHFKPPVVVFVGSRLGADLLSEAITVTTGMKALSIHGEKPMMERRETLRLFLAGEISVIVATGVLGRGVDLLRVRQVIVFDMPKSIEEYIHQIGRASILGEEGTAIVLLNEESKNLFPEFVDVLKSSGAVVPRELANSRYTTSYSAFKGQKKRKHGF* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g01036 540 Gene3D - 106 350 IPR027417 -
Eupl08g01036 540 CDD SF2_C_DEAD 360 492 - -
Eupl08g01036 540 Gene3D - 27 85 - -
Eupl08g01036 540 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 115 520 - -
Eupl08g01036 540 Gene3D - 351 525 IPR027417 -
Eupl08g01036 540 Pfam Helicase conserved C-terminal domain 372 479 IPR001650 -
Eupl08g01036 540 Pfam HIT zinc finger 46 73 IPR007529 -
Eupl08g01036 540 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 359 522 IPR001650 -
Eupl08g01036 540 SMART ultradead3 160 363 IPR014001 -
Eupl08g01036 540 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 141 169 IPR014014 GO:0003724
Eupl08g01036 540 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 172 348 IPR014001 -
Eupl08g01036 540 FunFam DEAD-box ATP-dependent RNA helicase 41 28 85 - -
Eupl08g01036 540 SMART helicmild6 401 483 IPR001650 -
Eupl08g01036 540 Pfam DEAD/DEAH box helicase 165 336 IPR011545 GO:0003676|GO:0005524
Eupl08g01036 540 MobiDBLite consensus disorder prediction 1 23 - -
Eupl08g01036 540 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 126 349 IPR027417 -
Eupl08g01036 540 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 288 496 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g01036 Eupl-Chr8 28912403 28914220 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g01036 142 502 Eukaryotic Initiation Factors Gene Family AT1G72730 31.522 1.88e-53 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g01036 K19466 - nnu:104611198 840.106