Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g01021 ATGGTTTGCACTGCTGATGATCTACTGGGGTGGAAGGATTTTCCTAAAGGCCTCAGGGTTCTTCTCCTTGATGAAGACAGTCTCTCTGCTGCCGAGATAAAGTCGAAGCTGGAAGAAATGGACTATATTGTTTCTACATTCTGCAATGAGAATGAAGCTTTGATGGCACTATCAAACAAACCCGAGAGCTTCCACGTTGCTATAGTAGAGGTGAGCACAGGACATGGGGGTTTCAAGTTCCTAGAGACTGCTAAGGACTTACCGACCATCATGACTTCAAACATACATTGCCTAAGCACCATGATGAAATGCATCGCACTCGGTGCTGCTGAGTTCCTTCAGAAACCACTATCCGAAGACAAACTGAGGAATATATGGCAGCACGTGGTTCATAAGGCCTTTAATGCAGGGGGAAGTCCCCACTCCAAATCAATGAAGCCCATCAAAGAGACTGCAGTTTCCATGCTTCAGCTCCAACTAGAAACCAATGAACCTGAGAATCAAAACTTATTAGAAACAGAGAATGCAGTCAATGCCCCTGAATGCGACCATGAGCAGTCAACGGTCAGTGATAGGTTCCCGGCACCTTCGACCCCACAGTTGAAACAAGGTGGCAGATTGTTGGATGACGGGGATTGCCAAGACCAACCTAACTGCTCAGTAGAGAAAGAGCATGGGGACCAAGAAGGGGAATCAAAATCTGTCGAAACTACTTGCAACAACTCAGTTGTAAAAATTACTGTTAAGGTGGATCCTAGAGAGACTGTGGTCAAAGAAGAAGAATCACCCACTGATTCCAAGACTGGGTGCAAATTATCTCCTCATTCGCCAAATAAAGACAGCGTAGTGGACTCTAATGTCGAGGCTGGAAATCCAAAGAAGGCATCTCTTTCCAATTCGTGTGGGAACAGAGCTAATAGGAAGAAGATGAAGGTGGACTGGACACCAGAGCTGCACAAACGATTTGTGCAGGCAGTTGAGCAACTAGGCGTCGACCAAGCCATTCCTTCTCGGATTCTAGAGTTGATGAAAGTGGAGGGATTGACGAGGCATAATGTGGCAAGCCACCTCCAGAAGTATCGGATGCATAGAAGACACATTGTTCCAAAGGAAGAGGATCGGAGATGGCAGCATCCAAGAGACCCATTGCAAAGGGGTTATCCACAGAAATCCATCATGGCATTCCCTCCATACCATTCTAATCATGGTCTCCCAACAAATCAGTTCTACCCTGTGTGGGGCCATCCTAGCAGTCATCCCTCAGCTGGCGTCCAAATGTGGGGTCACCCTGGCTTCCCCACGTGGCAACCTCCCGAAAGTTGGCTTTGGAAGTCTTATCCAGGGATGCATGCGGATGCATGGGGTTGTCCCGTGATGCCACCGTCTCAAGGCCTGTGCTCTACCTTCCCACAAAATGCCTCCGGATATCATAGTTTGGACGCAGTTGAAGACGGTAGCTGCTTGCCGAAGAGTTCCTTCGACCTTCATCCGGCAGAGGAGGTAATAGACAAGGTTGTCAAAGAGGCAATAAGCAAGCCATGGCTACCTTTGCCATTGGGCCTCAAGCCTCCTTCCACAGAAAGCGTTCTCTCTGAGCTCCACAGACTAGGCATCTCCAACATACCTCCACATACTCAATACTGA 1644 0.4818 MVCTADDLLGWKDFPKGLRVLLLDEDSLSAAEIKSKLEEMDYIVSTFCNENEALMALSNKPESFHVAIVEVSTGHGGFKFLETAKDLPTIMTSNIHCLSTMMKCIALGAAEFLQKPLSEDKLRNIWQHVVHKAFNAGGSPHSKSMKPIKETAVSMLQLQLETNEPENQNLLETENAVNAPECDHEQSTVSDRFPAPSTPQLKQGGRLLDDGDCQDQPNCSVEKEHGDQEGESKSVETTCNNSVVKITVKVDPRETVVKEEESPTDSKTGCKLSPHSPNKDSVVDSNVEAGNPKKASLSNSCGNRANRKKMKVDWTPELHKRFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHIVPKEEDRRWQHPRDPLQRGYPQKSIMAFPPYHSNHGLPTNQFYPVWGHPSSHPSAGVQMWGHPGFPTWQPPESWLWKSYPGMHADAWGCPVMPPSQGLCSTFPQNASGYHSLDAVEDGSCLPKSSFDLHPAEEVIDKVVKEAISKPWLPLPLGLKPPSTESVLSELHRLGISNIPPHTQY* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g01021 547 SUPERFAMILY CheY-like 16 132 IPR011006 -
Eupl08g01021 547 MobiDBLite consensus disorder prediction 178 197 - -
Eupl08g01021 547 MobiDBLite consensus disorder prediction 267 304 - -
Eupl08g01021 547 NCBIfam myb-like DNA-binding domain, SHAQKYF class 309 363 IPR006447 GO:0003677
Eupl08g01021 547 Pfam Myb-like DNA-binding domain 312 361 IPR001005 -
Eupl08g01021 547 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 306 365 IPR017930 -
Eupl08g01021 547 FunFam Two-component response regulator 305 368 - -
Eupl08g01021 547 Pfam Response regulator receiver domain 20 125 IPR001789 GO:0000160
Eupl08g01021 547 SUPERFAMILY Homeodomain-like 308 366 IPR009057 -
Eupl08g01021 547 MobiDBLite consensus disorder prediction 216 232 - -
Eupl08g01021 547 ProSiteProfiles Response regulatory domain profile. 19 130 IPR001789 GO:0000160
Eupl08g01021 547 SMART REC_2 18 126 IPR001789 GO:0000160
Eupl08g01021 547 Gene3D - 18 137 - -
Eupl08g01021 547 Gene3D - 305 367 - -
Eupl08g01021 547 MobiDBLite consensus disorder prediction 178 238 - -
Eupl08g01021 547 MobiDBLite consensus disorder prediction 254 304 - -
Eupl08g01021 547 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 544 IPR044825 GO:0003700|GO:0045893
Eupl08g01021 547 FunFam Two-component response regulator-like APRR2 17 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g01021 Eupl-Chr8 28652878 28660142 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g01021 1 542 Response Regulator Gene Family AT4G18020 50.086 2.66e-145 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Eupl08g01021 Response_reg 2e-07 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g01021 - - vvi:100250547 794.267