Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g01018 ATGGCTCCAAGGAAGAAATCAGGTTCGTCTTCCACCAAGAAATCGAACCAGAACCTCCACCAATCCCAACCCTCCAAGTTCGGTATCCAACATTTCTTCGAGCGCCACACTCAAAATGCCGCTGCGTCGACTTCTCAAAACCCGAAAGATGTCCGTAGTTCCCAAACCCCTGATCCCAAAAACCCTTCTCAGAGCACACCTCCGGCGAATCTTCCGACAATCACCGCTGCCACAGCCATTAATGCTGAAGACAAGCCGTCCGAGGTCTCGCCTGAGATTTCTAAGTCGATGCCCTTCAAACGCTTCAAGTTCTCTCCTGGAATGTTGATAAAGCAAAGCCAGGATGATGGAGGGGATGAGGTGACATGGAAGATTTCTCCCGTGAACGAGCGGCTCCAGGCCGTATCAAAGCATTTGCCCAAGATGATGAGAGCCTTGGCAGATGCTTCAAGTTTTCGCCATTGTTCATTGAAACAGAATTCTCCTTGTTCGATGGGAAAGCTTGAGAAGTGGCTCTCTTCTCCAACACTAAAGGCCCCTGAAAGATCTTTATTGTTCTCAAAAATGTTACCTTTGAAAGTGGTTGACCCAGAACAGGAGGTAGAGTTCCATGGTAGTCATGGGAGTGGCACGGATCCGAACAATGCTGGTGCAGTTGATCGGCAGAGCCCTTTTAGGACTCCACCCTCTGTATCATATTGCCCTGATGAGCCTGCCAATGGCATTGTGTGTAAAGAAACTTCGGATCAGCTGGGTTCACGCCAACATAGAAAGGCATTGCTTGAACTTTTAGATCAAGTAGAAGATGTCATTGCTGTTGAAGAATCAATGCCTAATAACTCAGGGATATATTCATGTAATGCTCAAAATACAAAGGGTGGCGATACAGTTGTTGACTCCACTCCTCTAATGAAAACACCACAAGGGGTCAACTCTGGTTCTTCTTATCAATATTTTCTTGTATTGGAGGTTTCTGAGAAGCATAGAACCGCTGATTCATTATGTGTCCAATGCCCTTTCAAGGTTCTTCGCTTACTGAATGAGCAAAGTGGGGAAGAGTGGGCCTTGCATCTGCATGATGAATGGTTTTATAGCATCATTGGACCTGGAGACACTATTCATGTCATTGGAGAATTTGATGATCAGGGAAAATGTGTTGTAGACCGAGACAATAATCTTGTCATTGTTCATCCAGATATACTGGTGTCTGGAACAAGGGTTGCTGCTAGTTTCAGCTGCCCTAGACGAACTGTCCTGGATGAGAGGCTAAAGTGTAATGAACATTCAACTGCAGCATTAATTGGTATCTTGCTTCATCAGATTTTTCAGGCCGGACTGGTTAGGGAGTATCCCACAAAAGACTTCTTGGAGGAATATACAAGAATAGTGCTACAGAAAAACATCGAAAGCATGTATGCATGCGGAGTAAACGAGAATGATATGCACACAACGTTGATGGAAGCAATTCCGAGAATATTAAATTGGCTCATTTGCTTTAGGGATTTGCAGGAATCTAAAGTTCCTACTGTTGATTTTGGATCAAATGATGAACAAAGAAAGGTCAACATAACTGAGGTGATAGATATTGAGGAGATGGCATGGGCACCAAGATATGGTCTGAAAGGAATGATTGATGCGTCTGTCCGAGTAAAAATAGATTCGAGCATCGATGGACTCAAAGAGAAAATCATGCCTTTAGAGTTTAAAAGTGGAAAAGGAACCAGTGGGCAGTCCTTCATGGAACATTGTGCCCAGGTGATCTTATACACTCTTCTAATGTCCGAGAGATACTTGAAGCATATTGACTCTGGTCTTCTCTATTATCTCCATACAGATCAGACACAAGGAATTGCGGTTCAAAGATCTGACATGGTTGGGCTAATCATGCGCCGTAATGAGCTTGCGAATGATATTCTAAAGGCGTCAAAAATACAACAATTACCTCCAATGTTACAAAATCCGAACATGTGCAAAAGTTGTCGCCACCTCAATGTTTGTACCATTTATCATAAGGCACATGGTGGCAGCACAGATAGCAGTGGACTTGGCGATGTGTTTAATTCACATGTTGAACACTTAATTAGTGCTCATTGTGATTTCCTTAAAAAATGGGATCGATTGATTGATTTGGAGGCTAAAGAGACACAGGATGCAAAGAAAGAAATCTGGCGTTCACAGAATCTGAGGAGTGAACGATCCGCTAACAGCCTTTCTTCCATTATTCTTGATGTTTCAAATGAACTAACACGAAACAAGTCTTCCAAAGATGGCCGATTCATTTATCATTTTGTGCATAAAGATATGACGCTTCTTGATCCAGAAATGCATAATGGAGAAATTCTGAATGCTGCCCCTTCTCTAACAAGCAACCTGGATTCCACTCTCAGAAGTGGGGACTATGTGATACTTAGCACGGAATCTGGGCATGTAGCAGTTGCAAATGGAGTCATAACAGACATCAGTCGCTTCCATATTTCTGTGTCCTTTTCTAGACGCTTAAGGCTTCCATGGAGCAGCCTTTCTTCAGAGACAGAAGATCTCCTTCGGGAGGTTTGGCGGATTGACAAGGATGAAGTTACTACCTCATTTGCAATTATGAGATTCAACCTCGTACAACTCTTTGTAAAAAGTACACAAAGTTCTCATCTTAGAAAGATGATAGTGGACTTGGAGGTGCCCAGGTTTGACAGTGGGGCTATATTTAGTCAAGATCCAGCGATATCCTATGTCCGGTCAGAGAAGAATTTGAATAATGATCAGCGCAGAGCTATACACAAGATACTTACAGCAAAGGATTATGCCCTCATTCTAGGAATGCCTGGAACAGGCAAGACATCCACTATGGTGCATGCTGTGAAGGCCTTGTTGATGAGAGGTGCATCCATTTTGCTTACGTCCTACACAAACTCAGCTGTTGATAATTTGCTTATCAAATTGAAAGCTCAGGGCATAGATTTTGTACGTATTGGAAGATATGAAGCCGTGCATGAGGAAGTTCGTGGGCATTGCTTTTCAGCAACAGACACACGCAGTGTTGAAGATATTAAACTAAGACTAGACCAAGTCAAAGTCGTTGCAGTAACTTGCTTGGGCATAACTCACCCCTTGCTTACCAAAAAGAGGTTTGACATATGCATAATGGATGAAGCTGGACAGACTACCCTGCCTGTATCCTTGGGGCCCTTAATGTTTGCTTCAACCTTTGTCCTTGTTGGAGACCATTACCAGCTACCCCCACTTGTGCAGAGCACGGAGGCGCGAGAGAATGGAATGGGGATAAGCCTGTTTTGCAGGCTTTCAGAAGCTCATCCTCAGGCAATTTCAGCTTTGCAATGCCAGTACCGAATGTGTGCTGGCATTATGGAACTATCGAATGTCCTAATATATGGGAACAGATTGCGTTGTGGTTCCCCTGAAGTAGCAAATGCTAAACTCAAGTTTTCGAGTACAAAGTCTAGTGCATCATGGCTAAAGGAGGTCTTGGATCCAAACAGATCGGTTGTATTGATCAACACAGATATGTTGCCTGCTTTGGAGGCAAAAGAACACAAGACTGTGAACAACCCAACCGAGGCTTACATTGTTGGAGAGATTACTGAGGAATTGTTGAACAAAGGCATTATGGGGGAAGAGATTGGCATCATTACTCCCTACAACTCGCAGGCAAATCTCATTCGACGTATTGTTGGCACATCTGTGGAGACACATACCATTGATAAATACCAGCAGGGAAGGGATAAGGACTGCATACTGGTGTCCTTTGTACGGTCTAGTGAAAATCCAAGGGCCTGCACTTCTTCACTGCTCGGTGACTGGCATAGGATCAATGTGGCTCTCACACGTGCTAAGAAGAAATTGATCATGGTGGGGTCCTGCGGAACTCTTTCGAAGGTTCCGCTGCTTAAGCTTATGATTGAGAAGGTTGATGAGCAGTTAGGCATTCAGTGTGTCTCCAAGAAGGATATTCACTTCGGAGAGCTGAAAAGATGCTCAGGCCTGTTGAGTGTAAAATAG 4014 0.4382 MAPRKKSGSSSTKKSNQNLHQSQPSKFGIQHFFERHTQNAAASTSQNPKDVRSSQTPDPKNPSQSTPPANLPTITAATAINAEDKPSEVSPEISKSMPFKRFKFSPGMLIKQSQDDGGDEVTWKISPVNERLQAVSKHLPKMMRALADASSFRHCSLKQNSPCSMGKLEKWLSSPTLKAPERSLLFSKMLPLKVVDPEQEVEFHGSHGSGTDPNNAGAVDRQSPFRTPPSVSYCPDEPANGIVCKETSDQLGSRQHRKALLELLDQVEDVIAVEESMPNNSGIYSCNAQNTKGGDTVVDSTPLMKTPQGVNSGSSYQYFLVLEVSEKHRTADSLCVQCPFKVLRLLNEQSGEEWALHLHDEWFYSIIGPGDTIHVIGEFDDQGKCVVDRDNNLVIVHPDILVSGTRVAASFSCPRRTVLDERLKCNEHSTAALIGILLHQIFQAGLVREYPTKDFLEEYTRIVLQKNIESMYACGVNENDMHTTLMEAIPRILNWLICFRDLQESKVPTVDFGSNDEQRKVNITEVIDIEEMAWAPRYGLKGMIDASVRVKIDSSIDGLKEKIMPLEFKSGKGTSGQSFMEHCAQVILYTLLMSERYLKHIDSGLLYYLHTDQTQGIAVQRSDMVGLIMRRNELANDILKASKIQQLPPMLQNPNMCKSCRHLNVCTIYHKAHGGSTDSSGLGDVFNSHVEHLISAHCDFLKKWDRLIDLEAKETQDAKKEIWRSQNLRSERSANSLSSIILDVSNELTRNKSSKDGRFIYHFVHKDMTLLDPEMHNGEILNAAPSLTSNLDSTLRSGDYVILSTESGHVAVANGVITDISRFHISVSFSRRLRLPWSSLSSETEDLLREVWRIDKDEVTTSFAIMRFNLVQLFVKSTQSSHLRKMIVDLEVPRFDSGAIFSQDPAISYVRSEKNLNNDQRRAIHKILTAKDYALILGMPGTGKTSTMVHAVKALLMRGASILLTSYTNSAVDNLLIKLKAQGIDFVRIGRYEAVHEEVRGHCFSATDTRSVEDIKLRLDQVKVVAVTCLGITHPLLTKKRFDICIMDEAGQTTLPVSLGPLMFASTFVLVGDHYQLPPLVQSTEARENGMGISLFCRLSEAHPQAISALQCQYRMCAGIMELSNVLIYGNRLRCGSPEVANAKLKFSSTKSSASWLKEVLDPNRSVVLINTDMLPALEAKEHKTVNNPTEAYIVGEITEELLNKGIMGEEIGIITPYNSQANLIRRIVGTSVETHTIDKYQQGRDKDCILVSFVRSSENPRACTSSLLGDWHRINVALTRAKKKLIMVGSCGTLSKVPLLKLMIEKVDEQLGIQCVSKKDIHFGELKRCSGLLSVK* 1338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g01018 1337 CDD SF1_C_Upf1 1116 1306 IPR047187 -
Eupl08g01018 1337 Pfam DNA replication factor Dna2 348 550 IPR014808 -
Eupl08g01018 1337 Gene3D - 403 667 IPR011604 -
Eupl08g01018 1337 Pfam AAA domain 1093 1292 IPR041679 -
Eupl08g01018 1337 CDD DNA2_N-like 403 638 - -
Eupl08g01018 1337 MobiDBLite consensus disorder prediction 201 227 - -
Eupl08g01018 1337 FunFam DNA replication helicase Dna2 510 667 - -
Eupl08g01018 1337 Pfam AAA domain 915 1005 IPR041677 GO:0004386
Eupl08g01018 1337 Pfam AAA domain 1015 1083 IPR041677 GO:0004386
Eupl08g01018 1337 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 915 1299 IPR027417 -
Eupl08g01018 1337 MobiDBLite consensus disorder prediction 36 60 - -
Eupl08g01018 1337 PANTHER DNA2/NAM7 HELICASE FAMILY 131 1307 IPR045055 -
Eupl08g01018 1337 MobiDBLite consensus disorder prediction 208 227 - -
Eupl08g01018 1337 Gene3D - 840 1011 IPR027417 -
Eupl08g01018 1337 Gene3D - 1012 1113 IPR027417 -
Eupl08g01018 1337 CDD DEXXQc_DNA2 915 1115 IPR026851 GO:0017116
Eupl08g01018 1337 FunFam DNA replication helicase 1114 1327 - -
Eupl08g01018 1337 FunFam DNA replication helicase Dna2 850 1113 - -
Eupl08g01018 1337 Gene3D - 1114 1320 IPR027417 -
Eupl08g01018 1337 MobiDBLite consensus disorder prediction 1 92 - -
Eupl08g01018 1337 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g01018 Eupl-Chr8 28586573 28616915 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g01018 1 1057 Core DNA Replication Machinery Family AT1G08840 57.143 0.0 1184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g01018 K10742 - nnu:104610411 1992.24