Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g01007 ATGGCAGAAGTGATTTCCATGGCGGAAATCGAAGCGACCGCTAATCGACTCGGAATCAATTTTTCTACACTGGACTTGGATAGTATAAGACTTCCTCCCGGCGAGGATTTTGACATCCCAAGTGATGATGAGGATGAACTGCGACAAGAAGACAGCTTGGAGTTTGATCAAGGGTTTGGTAACATCATAGTTGTCGACAATCTCCCAGTTGTTCCACCAGAGAAATTTGAGAAACTGGAAGGTGTTGTTCGGAAAATTTATAGCCAGATTGGCTTAATCAAAGATGATGGACTTTGGATGCCTGTTAATCCTGAAACCAAGAAAACCCTTGGATATGTTTTCATCGAATACAACACTCCTCAGGAAGCGGAGCTTGCAAGAGAGAAGACAAATGGATACAAGTTGGACAAGGCACATATATTTGCTGTGAACTTATTTGATGACTTTGACAGGTTTATGAAAGTACCAGATGAGTGGGCCCCTCCTGAAACTAAGCCATACATGCCTGGGGAAAATCTACAACAGTGGCTGACTGACGAGAAAGCCCGTGATCAGTTTGTTATTCGTGCTGGTTCAGACACTGAGGTTTTATGGAACGATCCCCGACAGTTGAAGCCTGAGCTTGTTTACCGTCGTGCTTTTTGGACAGAGAGTTTTGTGCAGTGGTCCCCGCTGGGAACTTACTTGGCTACAGTTCACAGGCAGGGTGCTGCTGTTTGGGGAGGTGCTGCTACCTTCAACCGCCTAATGCGTTATGCTCATCCGCAGGTTAAGCTCATTGATTTCTCTCCTGGGGAGAAATATATGATCACATATAGCAGTCATGAACCAAGCAATCCTCGTGACACGCATAGAGTCGTGCTGAATGTTTTTGACGTGAGGAGTGGCAAGATTATGAGAGATTTCAAGGGAAGTGCAGATGAGTTTGCTATTGGTGGTACTGGAGGCGTTTCTGGAGTGTCATGGCCTGTTTTTAGATGGGGTGGTGGAAAAGAGGACAAGTATTTTGCTAGGATTGGGAAGAACGTGATATCTGTCTACGAAACAGAGACCTTCACTCTTATTGACAAAAAGTCTTTGAAGGTTGAAAATGTGATAGACTTCTGTTGGTCGCCTACTGACCCCATACTTGCACTATTCGTTCCAGAGCTAGGTGGTGGGAACCAACCTGCCAGGGTGAGCCTCGTTCAAATCCCTGGCAAAGAGGAGCTGAGGCAGAAGAATCTCTTCAGTGTAAGTGACTGCCAGATGTACTGGCAAAGTAATGGGGACTACCTTGCTGTTAAGGTTGACCGGTACACGAAAACAAAGAAAAGCACGTACACTGGTTTCGAGCTCTTCCGCATAAAAGAACGGGACATCCCCATAGAGGTTCTGGAACTAGAAAACAAGAATGATAAGATTGTTGCCTTTGCTTGGGAGCCGAAAGGCCACAGGTTCGCGGTCATCCACGGGGATAGCCCAAGGCCTGATATTAGCTTCTACTCAATGCGGAGTGCTCACAACACAGGCCGCGTCTCAAAGCTCACAACTCTCAAGGGCAAGCAGGCTAATGCTCTCTACTGGTCCCCTGCTGGCCGTTTCATTATTATAGCAGGGCTGAAGGGTTTCAATGGACAGTTGGAATTCTACAATGTGGATGAGCTTGAGACCATGGCAACTGGTGAGCATTTCATGGCAACAGACATCGAATGGGATCCTACTGGAAGATATGCTGCAACTTCTGTTACGTCAGTTCATGAGATGGAAAACGGGTTCAACATCTGGTCATTCAATGGGAAGCTACTATATCGGATACCAAGGGATCATTTCTATCAGTTTTTGTGGCGTCCAAGGCCACCATCCTTCTTGAGTGCAGAAAAAGAAGAAGAGATTGCGAAGAACCTGAAGAAGTACACTAAAAAGTATGAACTAGAGGATCAGGATGTGTCAATGCTCTTGAGTGAGCAGGACCGCGAGAAACGGAAGCAATTGCAAGAGGATTGGGAGTCTTGGGTCAAGAAGTGGAAGCAATTGCACGAGGAGGAAAAGAATTATAGGCAGTTGTTGAGGGATGGAGGAGCGAGTGATGAAGAGGAGGAATACGAGGCCAAAGAAGTTGAGGTTGAAGAGATTTTGGATGTTACAGAGGAGATCGTTCCTTACGAGTTCGAGCAGGGTGAGAATTGA 2169 0.462 MAEVISMAEIEATANRLGINFSTLDLDSIRLPPGEDFDIPSDDEDELRQEDSLEFDQGFGNIIVVDNLPVVPPEKFEKLEGVVRKIYSQIGLIKDDGLWMPVNPETKKTLGYVFIEYNTPQEAELAREKTNGYKLDKAHIFAVNLFDDFDRFMKVPDEWAPPETKPYMPGENLQQWLTDEKARDQFVIRAGSDTEVLWNDPRQLKPELVYRRAFWTESFVQWSPLGTYLATVHRQGAAVWGGAATFNRLMRYAHPQVKLIDFSPGEKYMITYSSHEPSNPRDTHRVVLNVFDVRSGKIMRDFKGSADEFAIGGTGGVSGVSWPVFRWGGGKEDKYFARIGKNVISVYETETFTLIDKKSLKVENVIDFCWSPTDPILALFVPELGGGNQPARVSLVQIPGKEELRQKNLFSVSDCQMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIVAFAWEPKGHRFAVIHGDSPRPDISFYSMRSAHNTGRVSKLTTLKGKQANALYWSPAGRFIIIAGLKGFNGQLEFYNVDELETMATGEHFMATDIEWDPTGRYAATSVTSVHEMENGFNIWSFNGKLLYRIPRDHFYQFLWRPRPPSFLSAEKEEEIAKNLKKYTKKYELEDQDVSMLLSEQDREKRKQLQEDWESWVKKWKQLHEEEKNYRQLLRDGGASDEEEEYEAKEVEVEEILDVTEEIVPYEFEQGEN* 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g01007 722 PIRSF Transl_init_eIF3b 4 715 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Eupl08g01007 722 SMART rrm1_1 62 143 IPR000504 GO:0003723
Eupl08g01007 722 Coils Coil 688 708 - -
Eupl08g01007 722 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 61 148 IPR000504 GO:0003723
Eupl08g01007 722 Gene3D - 60 144 IPR012677 -
Eupl08g01007 722 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 55 714 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Eupl08g01007 722 FunFam Eukaryotic translation initiation factor 3 subunit B 182 383 - -
Eupl08g01007 722 SUPERFAMILY DPP6 N-terminal domain-like 218 599 - -
Eupl08g01007 722 Gene3D - 176 383 IPR015943 GO:0005515
Eupl08g01007 722 FunFam Eukaryotic translation initiation factor 3 subunit B 56 155 - -
Eupl08g01007 722 Gene3D - 407 628 IPR015943 GO:0005515
Eupl08g01007 722 SUPERFAMILY RNA-binding domain, RBD 53 142 IPR035979 GO:0003676
Eupl08g01007 722 CDD RRM_eIF3B 60 144 IPR034363 -
Eupl08g01007 722 Pfam Eukaryotic translation initiation factor eIF2A 407 607 IPR013979 -
Eupl08g01007 722 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 83 137 IPR000504 GO:0003723
Eupl08g01007 722 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 38 711 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Eupl08g01007 722 FunFam Eukaryotic translation initiation factor 3 subunit B 412 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g01007 Eupl-Chr8 28149495 28164868 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g01007 5 713 Eukaryotic Initiation Factors Gene Family AT5G27640 76.620 0.0 1167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g01007 K03253 - ming:122082416 1335.86