Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g01006 ATGGTTGTTTCCATGGAGGAAATTGAAGAGATGGCCAATCGACTTGGAATCGATCTTTCTACAGTGGACTTAGATAGTATAACACTTCCTCCTGGCGAAGATTTTAGCATCCCAAGTGATGACGAGGATGAGCTACGCCAAGAAGAAAATCTGCTGGAGCTCGAACAAGGGTTTGGTAATGTCATCATTGTCGACAATCTCCCGGTCGTTCCGCCGGAGAAATTTGAGAAACTGGAAGGCGTTGTTCGGAAAATTTATAGTCAGCTTGGTGTAATCAAGGAAGATGGGCTTTGGATGCCTGTTGATCCTGAAACCAAGAAAAGCCTTGGTTATTGCTTCATTGAGTACAATACTCCTCAGGAAGCAGAGCTTGCAAAAGAAAAGACAAATGGATACAAGTTGGACAAGGCACATATATTTGCTGTGAACTTATTTGATGACTTCGACAAGTTTATGAAAGTTCCAGATGTGTGGGCCCCTCCTGAAACTAAGCCATACGCGCCTGGGGAAAATCTACAACAGTGGCTGACTGACGAGAAAGCCCGTGATCAGTTTGTTATCCGTGCTGGTTCAGACACTGAGGTTTTATGGAATGATCCCCGACAGTTGAAGCCTGAGCTAGTTTACCGTCGTACTTTTTGGACAGAGAGTTTTGTACAGTGGTCCCCACTGGGAACATACTTGGCCACAGTTCACAGGCAAGGTGCTGCTGTTTGGGGAGGTGCTGGTACCTTCAACCGCCTAATGCGTTATGCTCATCCACAGGTTAAGCTCATTGATTTCTCTCCTGGGGAGAAATATTTGGTCACATATAGCAGTCATGAACCAAGTAATCCTCGTGACACGCATAGGGTCGTGTTGAATATATTTGACGTGAGGAGTGGCAAACTAATGAGAGATTTCAAGGGAAGTGCGGATGAGTTTGCTACTGGTGGTACTGGAGGTGTTTCTGGAGTGTCATGGCCTGTGTTTAGATGGGGTGGTGGAAAAGATGACAAATATTTTGCTAGAATTGGGAAGAACGTAATATCTGTGTATGAAACAGAGACCTTCACTCTTATTGACAAAAAATCTTTGAAGGTTGAAAATGTGATAGACTTCTGTTGGTCACCTACTGAACCCAAATTTGCACTGTTCGTTCCAGAGCTAGGTGGTGGGAACCAACCTGCCAGGGTGAGCCTTGTTCAAATCCCTGGCAAAGAGGAGCTGAGGCAGAAGAATCTCTTCAGTGTAAGTGACTGCAAGATGTACTGGCAAAGTAATGGGGACTACCTTGCTGTTAAGGTTGAGCGTTACACGAAAACAAAGAAAAGCACGTACACTGGTTTTGAGCTCTTCCGCATAAAAGAACGGGACATCCCTATAGAAGTTCTGGAACTGGAAAATAAGAATGACAAAATTGTTGCCTTTGCTTGGGAGCCAAAAGGCCACAGGTTCGCAGTCATCCACGGGGATAGTCCAAGGCCTGACATTAGCTTCTACTCAATGCGGAGTGCTCACAACACGGGCCGCGTCTCAAAACTCGCGACTCTCAAGGGCAAGCAGGCTAATGCTCTCTACTGGTCCCCTGCTGGCCGTTTCATTATTATAGCAGGGCTGAAGGGTTTCAACGGACAGTTGGAATTCTACAACGTTGATGAGCTTGAGACCATGGCAACCGGTGAGCATTTCATGGCAACAGACATCGAATGGGATCCTACTGGAAGATATGTTGCGACTTCTGTTACTTCTGTTCATGAGATGGAAAATGGGTTCAACATCTGGTCCTTCCACGGGAAGCTACTATATCGGATACCAAGGGATCATTTCTATCAGTTTTTGTGGCGTCCAAGGCCACCATCCTTCTTGAGTGCAGAAAAAGAAGAAGAGATTGCGAAGAACCTGAAGAAGTACTCCAAGAAATATGAGCTAGAGGATCAGGATGTGTCAATGCTCTTGAGCGAGCAAGACCGTGAAAAGCGGAAGCAGTTGCATGAGGAATGGCACAGCTGGGTCCAAAAGTGGAAACAGATGCACGAGGAGGAAAAGGATTATAGGCAGTTGTTGAGGGATGGAGAAGCAAGTGATGAAGAAGAGGAATACGAGGCCAAAGAAGTTGAGGTTGAAGAGATTTTGGATGTTACAGAGGAGATCGTTCCTTACGAATTCGAGCAGGGTGAGAATTGA 2166 0.4575 MVVSMEEIEEMANRLGIDLSTVDLDSITLPPGEDFSIPSDDEDELRQEENLLELEQGFGNVIIVDNLPVVPPEKFEKLEGVVRKIYSQLGVIKEDGLWMPVDPETKKSLGYCFIEYNTPQEAELAKEKTNGYKLDKAHIFAVNLFDDFDKFMKVPDVWAPPETKPYAPGENLQQWLTDEKARDQFVIRAGSDTEVLWNDPRQLKPELVYRRTFWTESFVQWSPLGTYLATVHRQGAAVWGGAGTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDTHRVVLNIFDVRSGKLMRDFKGSADEFATGGTGGVSGVSWPVFRWGGGKDDKYFARIGKNVISVYETETFTLIDKKSLKVENVIDFCWSPTEPKFALFVPELGGGNQPARVSLVQIPGKEELRQKNLFSVSDCKMYWQSNGDYLAVKVERYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIVAFAWEPKGHRFAVIHGDSPRPDISFYSMRSAHNTGRVSKLATLKGKQANALYWSPAGRFIIIAGLKGFNGQLEFYNVDELETMATGEHFMATDIEWDPTGRYVATSVTSVHEMENGFNIWSFHGKLLYRIPRDHFYQFLWRPRPPSFLSAEKEEEIAKNLKKYSKKYELEDQDVSMLLSEQDREKRKQLHEEWHSWVQKWKQMHEEEKDYRQLLRDGEASDEEEEYEAKEVEVEEILDVTEEIVPYEFEQGEN* 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g01006 721 Gene3D - 445 624 IPR015943 GO:0005515
Eupl08g01006 721 SMART rrm1_1 61 142 IPR000504 GO:0003723
Eupl08g01006 721 CDD RRM_eIF3B 59 143 IPR034363 -
Eupl08g01006 721 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 30 709 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Eupl08g01006 721 Gene3D - 59 143 IPR012677 -
Eupl08g01006 721 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Eupl08g01006 721 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 136 IPR000504 GO:0003723
Eupl08g01006 721 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 60 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Eupl08g01006 721 Pfam Eukaryotic translation initiation factor eIF2A 406 606 IPR013979 -
Eupl08g01006 721 Coils Coil 618 638 - -
Eupl08g01006 721 FunFam Eukaryotic translation initiation factor 3 subunit B 55 154 - -
Eupl08g01006 721 PIRSF Transl_init_eIF3b 4 714 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Eupl08g01006 721 FunFam Eukaryotic translation initiation factor 3 subunit B 181 382 - -
Eupl08g01006 721 SUPERFAMILY RNA-binding domain, RBD 58 139 IPR035979 GO:0003676
Eupl08g01006 721 Gene3D - 175 385 IPR015943 GO:0005515
Eupl08g01006 721 Coils Coil 687 707 - -
Eupl08g01006 721 FunFam Eukaryotic translation initiation factor 3 subunit B 411 626 - -
Eupl08g01006 721 SUPERFAMILY DPP6 N-terminal domain-like 217 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g01006 Eupl-Chr8 28120460 28130756 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g01006 7 712 Eukaryotic Initiation Factors Gene Family AT5G27640 76.662 0.0 1157