Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00998 ATGGAGAAAGAAGAAGAGAACTACTCGGCAGGTTTGCCGGCGAGTTATACAGGTTTAGACTACTCTATAGACCATCATCATCAGCTCATGAGGCCATGGATCGGAGAGAATTCCGGCGACAACAACGCTGGGATGGTGGACTACATGTTCAACAACCCTCCACCCCCACAAGTATCTTCTGGTTTTTGTAGCTCCAACGCTCTTGAAAAATTGAGCATCAATGAAGTGATGCAATTTGCTGATTTTGAACCCAAATTGACCTTAAACCAGACCAACATCTCAGACGAAGAAAATGGGATCAACGTTGACCCAGTTTACTTCCTTAAGTTTCCGGTATTGAACGATAAGTCGCAGGATCATCAAACTCTCATGGCTCCTCCATCAATTGGAAATGATGAAGAGAAATTTAAAGGAGTGAGTATAGAAAGTAAGGCAACAATCATCGAAGAAGAAGCCGAAGATGAGGCCTCACTGCGGTTTCGTTTTCTTGGAGGAAGTCTTCAGAATAAGGACCCCACCTCTGAAACAAAGAATCGACGGAAGAGGCTTCGATCAGTGAAGACGAGCGAGGAGGTCGAGAGCCAACGGATGACTCACATCGCAGTCGAACGCAACAGAAGGAAGCATATGAATGAGCATATAAGAGTGTTGAGGTCTCTAATGCCGGGCTCATACGTTCAAAGGGGAGATCAAGCATCCATCATCGGTGGAGCGATCGAGTTTGTAAGAGAATTAGAGCAACTCCTTCAATGTTTAGAATCTCAAAAGCAGCGAAGACTCTTTGGTGATCCAATTCCAACCTTGTCTCTTCCCAACGATCAGATCAAGCTTGTCGACTTCGAATTAGGACTCCATGAGGAAACGGCGAAGAACAAGTCCTGCTTAGCCGATGTCGAAGTTACGCTCTTAGGCTTCGATGCCCTGATCAAGATCCTTTCTCCTAGAAGACCTGGCCAGCTCCTCAAGATGATAGCATCCCTTGAAGAATTGCAACTCAATATCTTCCACACTAACATCACGACCATTGAACAAACTGTTCTCTACTCCTTTAACGTCAAGGTCGCGAGCGAATCAAGGTCTTCAGCCGAAGACATTGCGAATTCGGTTCAACAGATATTCAATTTCATCCATGCAAGCAGCACCATATAA 1149 0.4517 MEKEEENYSAGLPASYTGLDYSIDHHHQLMRPWIGENSGDNNAGMVDYMFNNPPPPQVSSGFCSSNALEKLSINEVMQFADFEPKLTLNQTNISDEENGINVDPVYFLKFPVLNDKSQDHQTLMAPPSIGNDEEKFKGVSIESKATIIEEEAEDEASLRFRFLGGSLQNKDPTSETKNRRKRLRSVKTSEEVESQRMTHIAVERNRRKHMNEHIRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKQRRLFGDPIPTLSLPNDQIKLVDFELGLHEETAKNKSCLADVEVTLLGFDALIKILSPRRPGQLLKMIASLEELQLNIFHTNITTIEQTVLYSFNVKVASESRSSAEDIANSVQQIFNFIHASSTI* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00998 382 CDD ACT_UUR-ACR-like 308 372 - -
Eupl08g00998 382 FunFam Basic helix-loop-helix transcription factor 185 260 - -
Eupl08g00998 382 MobiDBLite consensus disorder prediction 167 196 - -
Eupl08g00998 382 SUPERFAMILY ACT-like 308 370 IPR045865 -
Eupl08g00998 382 Pfam Helix-loop-helix DNA-binding domain 195 246 IPR011598 GO:0046983
Eupl08g00998 382 SMART finulus 200 251 IPR011598 GO:0046983
Eupl08g00998 382 MobiDBLite consensus disorder prediction 173 196 - -
Eupl08g00998 382 Gene3D - 192 260 IPR036638 GO:0046983
Eupl08g00998 382 CDD bHLH_AtFAMA_like 197 264 - -
Eupl08g00998 382 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 194 245 IPR011598 GO:0046983
Eupl08g00998 382 PANTHER TRANSCRIPTION FACTOR FAMA 45 373 IPR044283 GO:0003700|GO:0010052
Eupl08g00998 382 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 194 261 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00998 Eupl-Chr8 27999211 28001363 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00998 33 382 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 56.030 1.36e-132 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl08g00998 HLH 8.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00998 K26213 - nnu:104589386 509.605