Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00995 ATGGATCCTGGACGCTATGTACTTCAGCAAGGATGGGATAATAACAGCGCTTTGGAGGGATATGGTGCAGTCCATGAGCCAGACTTCCGGGTTGGTGGGTCATATAATGGTAGGAGGTTTCTTGATGAGGGATTCTCAAGGGACAGCATCTATCCAAGGAGTGCTTTCCATCGAGATATCCTTGAGAGGGACAACTATCCGGCCCCATCATCTGTTGGTGCTTGGCCTCAACCAAGGAGGAGAAGTTTTGATGAAGAATATGCACTCGCTAGGGAATCTAGACGACATGAGAAGCCATACCTTGATTCTTTTCATGATATGGATGGTTTTCCTGAAGTTGACAAGTACCGTGAGATTAATACGTTTCAAGAAGTTGATAAGTTTCGGGATAACTATCGAAGTATTGACAGCTACCGTGACGTTGATAGCTACCGTGATCATGGATTTGATAGGCCTGCAAGGTTTGCAGGCCGCGAACGTGATGATTTTCCTGTTGATGATTATGACTACAGACATCGTATTTCTCACCCAAGTAGGGAGGATAGCCGTGAGAGAGATTATGATTATGGTCGGTCTAGCTACGATTCTGATCATGACAGAGGTAGTAGGAGAGACAGTAGTTGGAGAAGACGCGAGTCACGTGATCGTGACCGTGAACGTGACAAGAGTTGTCTGAGTCGGGATAGGGATCAGAGTCCACATAGAAGGCATGAGCGTTCACGGTCTCGTGGGCGTGATGATCGACTCAGATCAAGGTCTCCTCGAGGCCGTAGCCATGGTCGAAGTCATCGGGAGGACAGTTATGATGACAATCGACATGAGAGGAGCGAGAAACGAAGGGATCGTGACGAAAAACGAAGTCACGAGCATTCTTCAGTGGCCCCATCCGCTACTGTTGTCGTGAAGGGTCTGTCGCAGAAGACAACTGAGGAAGATCTTTATCAGATTCTTGCTGAATGGGGACCCCTTCGTCATGTGCGTGTAATTAAAGAACGAAATTCTGGCATCTCTCGTGGATTTGCTTTTATTGATTTCCCTTCTGTGGGAGCGGCACGTGCGATGATGGATGGAATTGGAGATGATGGTCTGGTGGTGGATGGCAGGAAGCTATTTTTTGAGTACAGTAGCAAGCCAACTGGCGGAGCAGGTGCACCTCCTTTCGGGCAGGAGAATTCAGCGAAATCAAGTCATGGGAACAATAGAAGCATTGCGCCACCATCTGATTGGATGTGCACTATTTGCGCCTGTGTGAATTTTGCCCGGCGGACGTCCTGTTTCCAGTGTAACGAGGCACGAACTGATGATGCTCCGGCAGCAGATTTAACATCATCCAATCCTGCACCATTAGGAAAGAAAGGGTCCGATGCAGGTCCTACTCATGTATTGGTTGTCCGTGGGTTGGATGAGAACGCTGATGAAGAAATGCTTCGGTATGAGTTTTCCAAACATGCTCCAATCAAGGATCTTCGTCTTGTCAGAGACAAATTTACCCATGTTTCTAGGGGATTTGCATTTGTTCATTTCCATTCGGTGGACGATGCTACCAAAGCTTTAGAAGTGACAAATGGAACAACCCTTGAGAAGAATGGTCAAATCTTACGTGTAGCATATGCAAAAAGTATCCATGGACCAGGGTCAGGAGTGTCTGGGGTTTCACAATCAAGCAGCCTTGCTGCTGCTGCAATTGAGGCAGCGACATTTGCTCAACAGTATGATGCTGTTGGATGGGCACCAAAAGAATATAATCCAGACGAGAAACAATCTGCCGGAGGGCTGGATCAAGGTAGTGGAGAACATGCGGGTCAAAAAGATGGTTCAGCCCCCCAATCAGGATTTGTATGGGATGAAGCATCTGGTTATTATTATGACGCTGCTTCCGGGTTCTACTATGATGGGAATACAGGTCTTTATTATGATGGTAACAATGGAGCCTGGTATTCTTATGATCACCAAACTCAGCAGTATGTCCCTTGTGTCGATCAAAATGATAAGCCATCTGGAAAGTCAATGAATGAACCTTCCAAAACATCAGATGGTGCCAATAACAGAAAAGTAGTGATATCTGCACCTGCTGCTACCATAACATTGAGTGAGAAAGCTGCCTCATTACCAGATGCCGTCCAGGCTGCTGCAACAGCAGCACTAGCTGCAGAGAAGAAAGAGAAGGAGAAGATGAAAGAGATAAGGTTGGCCTCGAAGAGTAGTATTCTGGCAAACAAGAAGAAGATGAGTAACGTTTTAACCATGTGGAAGCAAAGGAATCACGAGGGTCAGGCAGCCCGCGTGGTTCTCGATGACAATCAGCCATCTGCTTCAACAGATGACAGGGCCAATGCTGCAGGACTGTCTGCTAAAAATAAGTTCAAAACTGATGCTATGACTGCAAAAGAAAATGCTACAACCACCTCAGGATTTACATCCACAGCTATAGGTCGTGGTGTAAGTAATACCTCAACTACATCCATTTCTGCTCAGGCTGCCCCCATGGATTCTCAGGTTAAGCCAAGGCCTGTGAGTAACAGCTTAGGGGGCACACTAATGGGGGTGATTAGAGGCTCTGGAAGAGGGGTAGTGAAGTCAGATACAATGTATTCAGGATCATCAGGTGGGATCTCCACCTCCTCAACTGCTGTTATGAGCACTGCAGGGGCATCATCAGCGAACCCAGAGACATCCTCCAGCGTCACACCTTTTCGAACAGACGTGTCTGCACTTGGTTCTTATACACCACCTGTGGCTGCTGGGAGTGGCAAAAGGAGGTTTTCTGAGATGCCACTGCAGCAGGCTTCTACTCATAAGGAACAACCTCAGACAACATACAGGGACCGTGCAGCTGAGAGAAGGAGCCTATATGGATCGTCAGCATCTATTGGTGATGATCTGTCTGACATTGGGCTTGGGGATTCAAATCGAGAATTGGCATTCAGAAAGGGTTCTTTGTCGGATATGGGGGCAATGCCCTTTCCCCCTGGGGTTGGAGGAGGACGTGGGGCAGATGTCAGTAGCAACGCTCAGAGTTATGAGGTGATCACGGCAGATAAAGCCATCGATGAGAGTAACGTGGGCAACCGGATGCTCCGCAGCATGGGCTGGCAAGAAGGCTTGGGACTCGGGAGGGATGGCAGCGGCATAACAGAACCAGTCCAAGCGAAAGGCATGGAAGATAGAGCAGGACTTGGGAGTCAGCAGAGAAAGGTGGACCCGAGCTTGGAGGTGCAGGCAGGGGATAGTTACAGGACCCTCATACAAAAGAAAGCCCTTGCCAGGTTCCGCGAGATGGTTTAG 3285 0.4819 MDPGRYVLQQGWDNNSALEGYGAVHEPDFRVGGSYNGRRFLDEGFSRDSIYPRSAFHRDILERDNYPAPSSVGAWPQPRRRSFDEEYALARESRRHEKPYLDSFHDMDGFPEVDKYREINTFQEVDKFRDNYRSIDSYRDVDSYRDHGFDRPARFAGRERDDFPVDDYDYRHRISHPSREDSRERDYDYGRSSYDSDHDRGSRRDSSWRRRESRDRDRERDKSCLSRDRDQSPHRRHERSRSRGRDDRLRSRSPRGRSHGRSHREDSYDDNRHERSEKRRDRDEKRSHEHSSVAPSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGISRGFAFIDFPSVGAARAMMDGIGDDGLVVDGRKLFFEYSSKPTGGAGAPPFGQENSAKSSHGNNRSIAPPSDWMCTICACVNFARRTSCFQCNEARTDDAPAADLTSSNPAPLGKKGSDAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFHSVDDATKALEVTNGTTLEKNGQILRVAYAKSIHGPGSGVSGVSQSSSLAAAAIEAATFAQQYDAVGWAPKEYNPDEKQSAGGLDQGSGEHAGQKDGSAPQSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGAWYSYDHQTQQYVPCVDQNDKPSGKSMNEPSKTSDGANNRKVVISAPAATITLSEKAASLPDAVQAAATAALAAEKKEKEKMKEIRLASKSSILANKKKMSNVLTMWKQRNHEGQAARVVLDDNQPSASTDDRANAAGLSAKNKFKTDAMTAKENATTTSGFTSTAIGRGVSNTSTTSISAQAAPMDSQVKPRPVSNSLGGTLMGVIRGSGRGVVKSDTMYSGSSGGISTSSTAVMSTAGASSANPETSSSVTPFRTDVSALGSYTPPVAAGSGKRRFSEMPLQQASTHKEQPQTTYRDRAAERRSLYGSSASIGDDLSDIGLGDSNRELAFRKGSLSDMGAMPFPPGVGGGRGADVSSNAQSYEVITADKAIDESNVGNRMLRSMGWQEGLGLGRDGSGITEPVQAKGMEDRAGLGSQQRKVDPSLEVQAGDSYRTLIQKKALARFREMV* 1095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00995 1094 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 297 377 IPR000504 GO:0003723
Eupl08g00995 1094 CDD OCRE_SUA_like 605 658 IPR035623 -
Eupl08g00995 1094 MobiDBLite consensus disorder prediction 174 291 - -
Eupl08g00995 1094 SMART rrm1_1 461 536 IPR000504 GO:0003723
Eupl08g00995 1094 SMART rrm1_1 298 373 IPR000504 GO:0003723
Eupl08g00995 1094 MobiDBLite consensus disorder prediction 658 683 - -
Eupl08g00995 1094 SUPERFAMILY Ran binding protein zinc finger-like 397 435 IPR036443 -
Eupl08g00995 1094 SUPERFAMILY RNA-binding domain, RBD 282 380 IPR035979 GO:0003676
Eupl08g00995 1094 SMART G-patch_5 1016 1062 IPR000467 GO:0003676
Eupl08g00995 1094 MobiDBLite consensus disorder prediction 174 297 - -
Eupl08g00995 1094 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 460 540 IPR000504 GO:0003723
Eupl08g00995 1094 ProSiteProfiles Zinc finger RanBP2 type profile. 405 434 IPR001876 -
Eupl08g00995 1094 ProSitePatterns Zinc finger RanBP2-type signature. 409 428 IPR001876 -
Eupl08g00995 1094 Gene3D - 399 435 - -
Eupl08g00995 1094 CDD RRM1_RRM2_RBM5_like 458 538 - -
Eupl08g00995 1094 MobiDBLite consensus disorder prediction 381 402 - -
Eupl08g00995 1094 SMART zf_4 407 431 IPR001876 -
Eupl08g00995 1094 MobiDBLite consensus disorder prediction 882 919 - -
Eupl08g00995 1094 MobiDBLite consensus disorder prediction 579 609 - -
Eupl08g00995 1094 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 299 356 IPR000504 GO:0003723
Eupl08g00995 1094 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 462 528 IPR000504 GO:0003723
Eupl08g00995 1094 MobiDBLite consensus disorder prediction 800 845 - -
Eupl08g00995 1094 Gene3D - 226 380 IPR012677 -
Eupl08g00995 1094 MobiDBLite consensus disorder prediction 882 903 - -
Eupl08g00995 1094 Gene3D - 444 611 IPR012677 -
Eupl08g00995 1094 ProSiteProfiles G-patch domain profile. 1018 1064 IPR000467 GO:0003676
Eupl08g00995 1094 MobiDBLite consensus disorder prediction 436 455 - -
Eupl08g00995 1094 MobiDBLite consensus disorder prediction 800 839 - -
Eupl08g00995 1094 Pfam OCRE domain 609 657 IPR041591 -
Eupl08g00995 1094 Pfam G-patch domain 1019 1060 IPR000467 GO:0003676
Eupl08g00995 1094 SUPERFAMILY RNA-binding domain, RBD 456 547 IPR035979 GO:0003676
Eupl08g00995 1094 PANTHER RNA-BINDING PROTEIN 200 1091 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00995 Eupl-Chr8 27935129 27949309 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00995 1003 1063 C2H2 Transcription Factor Family AT5G26610 42.623 1.67e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00995 K13094 - msin:131248132 1573.53