Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00990 ATGGCCTTATTCTCTCTTCAATCCCTTCTGCTCCTCCTTCTCTGTTTGCTTCTCAGGCAAACTCCGGCAGATGCCGCGACGTGTACCGACTGCTTCGTTCAATCTCGGGCCGCTTACTACCCAAACTCTGATGAACAGGGAACAGAAGCTGGAGCATGCGAGTTTGGCACGTTCGGAGCAACAATTAACGGCGGAGATGTATCAGCTGCGTCTGATCTCTATAGGGATGGTGTAGGGTGCGGGGCATGCTACCAGGTGAGATGCACCAACAGTAACTATTGCTCAGACAAAGGAGTGACAGTAGTCATCACTGATAATGGTTCTAGTGATCGCACAGACTTCATACTGAGTAGCCGAGCCTTTGGCAAGATGGCTCAAACCAAGGACTCAGCTGCATCACTACGATCCCTTGGTGTCGTCGACATCGAATATAGGCGTGTTTCATGTAGCTACCCAAACAAAAACATCACATTCAAGATTGATGGGAGCAGCAACTACCCTCACTACTTGGCTTTTGTCATATGGTACCAAGGAGGCAAGAAGGATGTCACTGCTGTACAGCTATGCGAGACTCAAAATTTATCATGCAAGCTGTTGGATCGGAGCCATGGAGCGGTATGGGCAACTGTCTCGCCCCCGAGCGGACCTTTGTCTATAAGGATGCTGTTGACCGACAGTGACGATGGAGACGAGAAATGGGTGGTTCCCACTAATGACATACCGCAGGAATGGAAAGCCGGGGACGAATTTGACTCAGGAATACAAATGGATTGA 774 0.4961 MALFSLQSLLLLLLCLLLRQTPADAATCTDCFVQSRAAYYPNSDEQGTEAGACEFGTFGATINGGDVSAASDLYRDGVGCGACYQVRCTNSNYCSDKGVTVVITDNGSSDRTDFILSSRAFGKMAQTKDSAASLRSLGVVDIEYRRVSCSYPNKNITFKIDGSSNYPHYLAFVIWYQGGKKDVTAVQLCETQNLSCKLLDRSHGAVWATVSPPSGPLSIRMLLTDSDDGDEKWVVPTNDIPQEWKAGDEFDSGIQMD* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00990 257 CDD DPBB_EXLB_N 33 149 - -
Eupl08g00990 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 154 IPR007112 -
Eupl08g00990 257 Pfam Expansin C-terminal domain 156 241 IPR007117 -
Eupl08g00990 257 SUPERFAMILY Barwin-like endoglucanases 23 153 IPR036908 -
Eupl08g00990 257 Gene3D - 151 256 IPR036749 -
Eupl08g00990 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 168 252 IPR007117 -
Eupl08g00990 257 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Eupl08g00990 257 PRINTS Expansin/Lol pI family signature 137 153 IPR007118 GO:0005576
Eupl08g00990 257 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
Eupl08g00990 257 Gene3D - 18 150 IPR036908 -
Eupl08g00990 257 PANTHER EXPANSIN-B3 12 255 - -
Eupl08g00990 257 SUPERFAMILY PHL pollen allergen 154 252 IPR036749 -
Eupl08g00990 257 Pfam Lytic transglycolase 71 144 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00990 Eupl-Chr8 27838310 27839997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00990 1 256 Expansin Gene Family AT4G17030 41.245 1.04e-60 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00990 - - nnu:104606425 426.017