Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00962 ATGCCTCTTCGAATTGACCTCTTCGCTCCTCCTCCACCTCCACCACCTCCTCCTCCATTACTAGAAGCTCACAACAATGGAGGTTCTTCCTCATCTTCAGGAAAAGATCTCAACCCTAGCCTTCTCATTATTGCTCTCATCCTCACCGTCGTTTTGTTTGTCTCCGTCTGTCTCCACCTCCTCCTCCGCTACCTCAATCGTCGTTGTAGTTCCGGTGACGATGAAGACGATGTGACGCCTATCGAGCCTCTCCACGTTCACCGCCTCTCTAGCCGACGCGTATTGCCCGAAGAACATCAAACCCTAATCGACTCTCTCCCTCTCTTCTCCTTTAATTCCGTCACTGGTCTCCGTTCCTCCGCCTCCGCTGATTGCGCCGTTTGTCTTTCCAAATTCGAACCGCAGGATCAGCTCCGCCTCCTCCCGATCTGCTGCCACGCTTTCCATTCTCGCTGCATCGACACGTGGCTTGCATCTAACCATACATGTCCTCTATGTCGGTCCACCATCCACGTGGCTGAATCTGATGGTTACTTGAAGCTGTTCTCATCATCTACCAACAGTGAGAGTTTCCGGCTTGAGATCGGGAGCGTAAGTCGCCGGAGAATGCCTTCAGATTCAGGTGACGTCCGGATGCGATCGTATTCGGTGGGATCGTTTGAGTACCTGGTGGAAGATGAGTCCGAGGTTGTAGTGGAGCCCACACACCGACGGGGAATTTCAGAATCCAGTTTTAGCAGGAAGAAGGATGAGGTATCGTCGCCGGTAACGGAGACACCGCCAGAACCACCGGGACCATCCGTAGTGGCGGAAGTCGGCGGAGGGAGAGGATGGTTGAAGGATTACGTGGACAAGTTAGCCTCATCATCTTCGTCGTCGTTCTCTTCGCGCGCTCTCTCATTTCGATTTTCGGGAAGAATTTTCACAGGAAGTAGTCGACGGAGTGAATATACAGGAAGCGGTAGCCGAAGCGAGGGTGGCGCCGCCGTTGCCAGTGGTGGCGGGAGTTGGGATTTGGAGGGAAACAGATACGGTGAGGACATCAGCAATTTTTTTCGGTGGCTGTCAGGGGTATAA 1077 0.533 MPLRIDLFAPPPPPPPPPPLLEAHNNGGSSSSSGKDLNPSLLIIALILTVVLFVSVCLHLLLRYLNRRCSSGDDEDDVTPIEPLHVHRLSSRRVLPEEHQTLIDSLPLFSFNSVTGLRSSASADCAVCLSKFEPQDQLRLLPICCHAFHSRCIDTWLASNHTCPLCRSTIHVAESDGYLKLFSSSTNSESFRLEIGSVSRRRMPSDSGDVRMRSYSVGSFEYLVEDESEVVVEPTHRRGISESSFSRKKDEVSSPVTETPPEPPGPSVVAEVGGGRGWLKDYVDKLASSSSSSFSSRALSFRFSGRIFTGSSRRSEYTGSGSRSEGGAAVASGGGSWDLEGNRYGEDISNFFRWLSGV* 359
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00962 358 CDD RING-H2_EL5-like 124 167 - -
Eupl08g00962 358 ProSiteProfiles Zinc finger RING-type profile. 125 167 IPR001841 -
Eupl08g00962 358 SUPERFAMILY RING/U-box 103 173 - -
Eupl08g00962 358 SMART ring_2 125 166 IPR001841 -
Eupl08g00962 358 MobiDBLite consensus disorder prediction 233 271 - -
Eupl08g00962 358 MobiDBLite consensus disorder prediction 1 22 - -
Eupl08g00962 358 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 32 243 - -
Eupl08g00962 358 MobiDBLite consensus disorder prediction 1 32 - -
Eupl08g00962 358 MobiDBLite consensus disorder prediction 311 339 - -
Eupl08g00962 358 SUPERFAMILY Formin homology 2 domain (FH2 domain) 10 19 - -
Eupl08g00962 358 FunFam E3 ubiquitin-protein ligase ATL6 87 173 - -
Eupl08g00962 358 MobiDBLite consensus disorder prediction 233 255 - -
Eupl08g00962 358 Pfam Ring finger domain 124 167 IPR001841 -
Eupl08g00962 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 176 IPR013083 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Eupl08g00962 Eupl-Chr8 27263469 27265150 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00962 58 214 C3H Transcription Factor Family AT2G18650 40.828 2.60e-24 101
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00962 K10663 - nnu:104606406 362.844