Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00921 ATGCCACCGCGAACGGTGAGGAAAGCGGCGAACGCTCCCGGGCCAAAGAGAACCCCAGGGAGAGCGGCTAAAGGGACACCGAAGGCCCAAAATCAACAAGTTACAGAAGAGACGGTGAAGATCGAAGTTAAAGAAGAGATTAAGGTGGAGGAGACCGTCGATGAACAACCGGTGGAGAAGCCTTCCGAGCCTGAACCTGAACTGAAGAAACCAGAGGGAAATAGATCCGTTTCTGTAAAAGAGGAAGATGATGTGAAGGAGGCTTTTGATGAGGATGACAAAGGTGAAAGGTTAGAGCTGGAGGATAATGAGGTAGAATATGAAGCTGAAGAAGACAATGGGCTGGACTATGATGAGAAGGATATTGAACACGAGGCTCTTCAGCAGGAAGGAGATGAAGGTCATGAAGAGGTTGAGGAGGGGGATGTAGGCGAAGAAGATGAAATGGTTGAGGAGGGAGGAATGGAAGACATCCCTGAGGAAATTGAAGGTGAAGAAGGTGAAGAGGATGAAGAGAATGACGAGGAAGAGCATGAAGACATGGTTGATGGAGAGGATGACGAGCACCATGAAGTCGTTAAGGAGAGGCGTAAGCGTAAGGAGTTTGAAGTATTTATTGGGGGCTTGGACAAGGATGTGACTGATGATGATCTTAAGAAAGTATTTAGTGTAGTAGGTGAGGTTACTGAGGTCAGGCTGATGATGAACCCTCTGACTAAGAAAAACAAGGGCTTTGCATTTTTACGTTTTGCAACTGTAGAACAAGCAAAGAGAGCTGTTACTGAGTTGAAGAACCCAGTGGTCAATGGGAAACAGTGTGGCGTTACTCCAAGTCAAGACAGCGATACTCTTTTCTTGGGCAACATATGCAAGACATGGACAAAAGAAGCTTTGAAGGAGAAGTTAAAACATTATGGAATTGAGAATGTTGAGGATTTGACATTGGTTGAAGATAGTAACAATGAGGGAATGAACCGTGGGTTTGCCTTCTTGGAATTTTCATCTCGTTCAGATGCCATGGATGCCTACAAGCGTCTGCAGAAGAGAGACGTTCTGTTTGGAGTTGATAGAACTGCAAAGGTTTCTTTTGCAGATTCTTTCATTGAGCCAGATGATGAAATCATGGCACAGGTTAAAACGGTATTTGTGGATGGTGTGCCTGCTTCATGGGATGAGGATCGTGTCAAGGAGCATCTCAAGAAATTTGGGGAGGTTGAAAAGATCGAACTTGCTCGCAATATGCCATCAGCCAAGAGAAAGGACTTTGGGTTTGTAACTTTTGACACCCATGATGCGGCAGTGGCATGTGCTGAATCCATTAACAATGCAGAGTTGGGCGAGGGAGACCACAAGGTAAAAGTTAGAGCCAGATTATCACGACCACATCAGAGAGGTAGAGGAAAGCATGCTGCACGTGGAGACTTTCGGCTTGGACGAGGGGCTACACGAGGTATACGTGGTTCCTGGGGTTTTCCAGCACCTCGTAGCTTCCCTGGACGTGGTTTTAGAGGAATCAGAGGCCGTGTGGCACTGTCTCATGGTCGTGGATTCAAGAGGCCATTTGGATTTAGAGATAGACGCCCTGTTATGACTATGCCAGAGAGAGTTAGGCCCATGCCACCCCCAGAGAGGTCCTACAACAGGAGACCTATCCCTTCCTACCCCAAGAACAGTTCAAAGAGGGATTACGGTCGGCACAACGAGCTTCCTCCAAGAAGCAGAGCTGCTGCTGACTATGGTTCCAGAGCTGCCACCGAGAGGCGGTCATCATACAGGGATGACTATTCATTCCGTGGATCTGGCTATTCTGATGATGTGCCTCGTACTGCTCCACGCACTGCAGCAAGGAGGGGCTATGTGGATGAAGGCTATGAGCGAAGGTTTGAAAGGCCTCCTCCAAGTTACCGTGAAGGACGTGCCTCTGACTATGAGTCGATCTCTGGGTCAAAACGGCAATTCTCTGCATTGGAGGATGTTCCTCCACGCTATGCGGATGCTAGTGTTCGCCAGTCAAGGGCTCGTTTGGACTATGGAGTTGGTGGCAGCGCTTCTCAATATGGGGACACTTACAGTGACAGGCTTGGAAGATCTCATCTAGGATATGGTGGCAGCAGAAGTGCTCTCTCTGCTCAGGATTCGCATGGGCTCTATGGCAGTCGTCAGGGTATGGGTTATGGTGGAGGTTCTTATGGTGGCAATGATGTTGGTGGAATGTACTCTTCGAGCTTGGGCAGTGATTATGTATCTCGTGGAGCTGATGTTGGTGATAGCTCTTATTCGTCACTATATTCCAGCCGTAGTTTGGGTGGTAGTGGTTACCTGGGAGGTAGTGGTTCTGGATCGTATTATTGA 2352 0.4809 MPPRTVRKAANAPGPKRTPGRAAKGTPKAQNQQVTEETVKIEVKEEIKVEETVDEQPVEKPSEPEPELKKPEGNRSVSVKEEDDVKEAFDEDDKGERLELEDNEVEYEAEEDNGLDYDEKDIEHEALQQEGDEGHEEVEEGDVGEEDEMVEEGGMEDIPEEIEGEEGEEDEENDEEEHEDMVDGEDDEHHEVVKERRKRKEFEVFIGGLDKDVTDDDLKKVFSVVGEVTEVRLMMNPLTKKNKGFAFLRFATVEQAKRAVTELKNPVVNGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGIENVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAYKRLQKRDVLFGVDRTAKVSFADSFIEPDDEIMAQVKTVFVDGVPASWDEDRVKEHLKKFGEVEKIELARNMPSAKRKDFGFVTFDTHDAAVACAESINNAELGEGDHKVKVRARLSRPHQRGRGKHAARGDFRLGRGATRGIRGSWGFPAPRSFPGRGFRGIRGRVALSHGRGFKRPFGFRDRRPVMTMPERVRPMPPPERSYNRRPIPSYPKNSSKRDYGRHNELPPRSRAAADYGSRAATERRSSYRDDYSFRGSGYSDDVPRTAPRTAARRGYVDEGYERRFERPPPSYREGRASDYESISGSKRQFSALEDVPPRYADASVRQSRARLDYGVGGSASQYGDTYSDRLGRSHLGYGGSRSALSAQDSHGLYGSRQGMGYGGGSYGGNDVGGMYSSSLGSDYVSRGADVGDSSYSSLYSSRSLGGSGYLGGSGSGSYY* 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00921 783 MobiDBLite consensus disorder prediction 132 184 - -
Eupl08g00921 783 MobiDBLite consensus disorder prediction 520 647 - -
Eupl08g00921 783 Gene3D - 283 365 IPR012677 -
Eupl08g00921 783 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 204 272 IPR000504 GO:0003723
Eupl08g00921 783 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 381 446 IPR000504 GO:0003723
Eupl08g00921 783 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 284 350 IPR000504 GO:0003723
Eupl08g00921 783 MobiDBLite consensus disorder prediction 534 548 - -
Eupl08g00921 783 CDD RRM_SF 204 275 - -
Eupl08g00921 783 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 24 744 - -
Eupl08g00921 783 SUPERFAMILY RNA-binding domain, RBD 281 453 IPR035979 GO:0003676
Eupl08g00921 783 FunFam RNA recognition water-stress protein1 369 490 - -
Eupl08g00921 783 CDD RRM_SF 381 455 - -
Eupl08g00921 783 FunFam Heterogeneous nuclear ribonucleoprotein Q 283 365 - -
Eupl08g00921 783 SUPERFAMILY RNA-binding domain, RBD 197 280 IPR035979 GO:0003676
Eupl08g00921 783 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 379 459 IPR000504 GO:0003723
Eupl08g00921 783 MobiDBLite consensus disorder prediction 763 783 - -
Eupl08g00921 783 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 135 282 - -
Eupl08g00921 783 MobiDBLite consensus disorder prediction 1 194 - -
Eupl08g00921 783 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 282 366 IPR000504 GO:0003723
Eupl08g00921 783 MobiDBLite consensus disorder prediction 85 118 - -
Eupl08g00921 783 MobiDBLite consensus disorder prediction 38 84 - -
Eupl08g00921 783 CDD RRM_SF 284 351 - -
Eupl08g00921 783 SMART rrm1_1 203 276 IPR000504 GO:0003723
Eupl08g00921 783 SMART rrm1_1 283 362 IPR000504 GO:0003723
Eupl08g00921 783 SMART rrm1_1 380 455 IPR000504 GO:0003723
Eupl08g00921 783 Gene3D - 368 489 IPR012677 -
Eupl08g00921 783 MobiDBLite consensus disorder prediction 618 637 - -
Eupl08g00921 783 Gene3D - 118 282 IPR012677 -
Eupl08g00921 783 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 202 280 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00921 Eupl-Chr8 25969160 26017865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00921 204 441 Eukaryotic Initiation Factors Gene Family AT4G34110 26.506 2.37e-16 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00921 - - nnu:104609827 983.4