Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00917 ATGGACGCTGATGTCGAAATGTCTAGGGCTGACGAAGACGATCCTAATGCCAAGGAGAACCTGGAGGAAATGAAGAAGAGACTGAAGGAGATCGAAGAAGAAGCCGGCGCTCTTCGCGAGATGCAGGCCAAAGTCGAGAAGGAAATGGGTGCGGTTCAAGATCCTTCTAGTGCTGCTGCAACACAAGCTGAAAAAGAGGAGGTGGATGCACGCTCGATATATGTTGGTAATGTAGACTACGCATGCACACCTGAGGAAGTTCAGCAGCATTTTCAGTCCTGTGGAACAGTGAACAGAGTGACGATTTTGACTGACAAGTTTGGTCAGCCCAAAGGATTTGCTTATGTGGAGTTTGTCGAAGTAGATGCTGTTCAAAATGCTCTCCTGTTAAATGAATCAGAGTTGCATGGTCGTCAGTTGAAGGTATCAGCTAAGCGAACCAATGTTCCTGGAATGAAGCAGTACCGAGGAAGGCGCGCCAACCCGTATCTTGGTTTTCGAGGCCGAAGACCATTCATGCCGGCCCCCTTCTATTCTCCTTATGGATATGGCAAGGCACCAAGATTCAGGAGGCCAATGCGGTACAGGCCATACTATTGA 600 0.4867 MDADVEMSRADEDDPNAKENLEEMKKRLKEIEEEAGALREMQAKVEKEMGAVQDPSSAAATQAEKEEVDARSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYRGRRANPYLGFRGRRPFMPAPFYSPYGYGKAPRFRRPMRYRPYY* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00917 199 MobiDBLite consensus disorder prediction 1 21 - -
Eupl08g00917 199 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 71 147 IPR000504 GO:0003723
Eupl08g00917 199 FunFam Polyadenylate-binding protein 1 7 143 - -
Eupl08g00917 199 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 73 141 IPR000504 GO:0003723
Eupl08g00917 199 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 13 172 - -
Eupl08g00917 199 SUPERFAMILY RNA-binding domain, RBD 62 170 IPR035979 GO:0003676
Eupl08g00917 199 Coils Coil 14 48 - -
Eupl08g00917 199 Gene3D - 2 154 IPR012677 -
Eupl08g00917 199 SMART rrm1_1 72 143 IPR000504 GO:0003723
Eupl08g00917 199 CDD RRM_II_PABPs 72 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00917 Eupl-Chr8 25817243 25835419 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00917 72 143 Eukaryotic Initiation Factors Gene Family AT2G36660 36.842 5.02e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00917 K14396 - msin:131234057 356.681