Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00905 ATGGGTCTGTCACTTAGCTTCTTTTCTTGTCTTCTGTGTCTCATGGTGCTCTTGCCTGCACTATGTACCTCCCAGGACACTTTCACCTACTCAAGAGCAACGTATTATGGTAGCCCTGATTGCTTAGGGACTCCAAGTGGAGCATGTGGATTTGGTGAATTTGGAAGAAATGTCAACGGTGGAGATGTGGGGGCTGTCTCTAGGCTGTATAGGAATGGCACTGGCTGTGGTGCATGCTACCAGGTTAGGTGCACCATACCGCAACTGTGCACCGACGATGGGGCGAAGATTGTGGTCACCGACCACGGTGAGGGTGATCACACCGACTTCATCCTTAGCCCTCGCGGCTTCACGAAATTAGCTCGTGCGAACATGGCCATAGACTTGATGGCATATGGTGTAGTCGACGTAGAATACAGAAGGATCTCATGCCAGTATCCAGGGTACAACCTCTTGTTCAAGGTCCATGAACATAGCAGATTTCCCGAATACTTGGCCATAGTCATCATATACCAAGCTGGCCAAAACGACATCACAGGCGTCGAATTGTGGCAGGAGGATTGTCAGCAATGGAGGGGCATGCGCAAGGCCTATGGCGGAGTTTGGGACATGACCAACCCTCCAAAGGGTGCCCTTAACTTGAGGTTCCAAGTTAGTGGAGCCAATGGCCAAAAGTGGGTACAAGCGAGAAATGGAATTCCTAACGACTGGAAGGCAGGGGTTGCCTATGACTCTGCCATGCAGCTTTCTTAG 753 0.5073 MGLSLSFFSCLLCLMVLLPALCTSQDTFTYSRATYYGSPDCLGTPSGACGFGEFGRNVNGGDVGAVSRLYRNGTGCGACYQVRCTIPQLCTDDGAKIVVTDHGEGDHTDFILSPRGFTKLARANMAIDLMAYGVVDVEYRRISCQYPGYNLLFKVHEHSRFPEYLAIVIIYQAGQNDITGVELWQEDCQQWRGMRKAYGGVWDMTNPPKGALNLRFQVSGANGQKWVQARNGIPNDWKAGVAYDSAMQLS* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00905 250 Gene3D - 19 144 IPR036908 -
Eupl08g00905 250 SUPERFAMILY PHL pollen allergen 150 245 IPR036749 -
Eupl08g00905 250 Gene3D - 145 246 IPR036749 -
Eupl08g00905 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 149 IPR007112 -
Eupl08g00905 250 SUPERFAMILY Barwin-like endoglucanases 13 148 IPR036908 -
Eupl08g00905 250 PRINTS Expansin/Lol pI family signature 191 205 IPR007118 GO:0005576
Eupl08g00905 250 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Eupl08g00905 250 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Eupl08g00905 250 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Eupl08g00905 250 PRINTS Expansin/Lol pI family signature 132 148 IPR007118 GO:0005576
Eupl08g00905 250 PANTHER EXPANSIN-B3 15 248 - -
Eupl08g00905 250 CDD DPBB_EXLB_N 31 144 - -
Eupl08g00905 250 Pfam Lytic transglycolase 67 139 IPR009009 -
Eupl08g00905 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 163 245 IPR007117 -
Eupl08g00905 250 Pfam Expansin C-terminal domain 153 234 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00905 Eupl-Chr8 25462341 25464826 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00905 1 250 Expansin Gene Family AT4G17030 54.980 4.10e-102 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00905 - - msin:131249841 427.943