Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00888 ATGGGCAAGCAAGGGCCTTGTTATCACTGTGGAGTTACAAGTACCCCTCTTTGGCGTAATGGGCCACCAGAGAAGCCAGTGTTGTGCAATGCATGCGGATCTCGATGGAGAACAAAGGGAACACTTGCAAACTACATCCCACTACATGCCCGAGCAGAACCTGATGATTTTGAGGATTACACAATTTCCAAAGTGAACACCGTATCCATTAAGGCCAAAGTGGCAAAGCTGCAGAAAAGAAAGCAAAGCTATGATAATGTGATAGTTGAAGGGGAAGCTCCAGATTATGACCAGAACTTCCGGAGGGTTCTTGAGGAGGATACAAGCAATAGATCAAGCTCTGGGTCCGCCATATCTTACTCTGAAAGCTGTGCACAATTCGGTGGTACAGATGCAAGTGAGTTGACAGGTTCGGCTCAATCCATCGTGTGGGATACACTCGTGCCATCAAGGAAGAGGACCTGTGTGAATCGTCCAAAGCCATCTTCTGTCGAGAAGCTTACAAAAGATTTATGCTCCATTTTACACGAGCAACAGTCTTCTTACTTTTCTGGATCTTCAGAAGAGGACTTGCTTTTCGAAAGTGAGGCCCCGATGGTCTCTGTCGAGATAGGCCATGGCAGTGTTCTCATCAAGCACCCGAACACAGCAGCTCGAGAGGAGGAATCGGAAGCCAGCTCACTTTCAATAGATAACAAACCAAATATTGTAAATGAGGCTTATTCGGGTTCTGCATCCCTTCGTGTACATACTGATAGCAAGGGTGTTAGTTTTCCAAGTGTCGGCGTTGATAAAATCAAGAAGCCTATGGGGCAAGTGACACAACAAGAGCACACAAAAAGGGATAAGTCTCACCATGAAAAGTTACAAATTCTGCGAAATCACAATTCACCACTGAGGTCCATAGATCTAAAAGATGTTGTTAGCTTTGAGGAGTTTGTGAGACATTTCACTCTGGAAGAACAACAGCTATTGATGAAGTATCTACCTTCCATGGATACCACCAGACTTCCTGATAGCCTAAAAAACATGTTTGATAGCCCTCAGTTCGCGGAAAACTTATCTTCTTTTCAGCAACTGCTCTTGGAAGGGGTCTTTGATCTCTCTTTCTTGGGAGTGAATAGCGAAGACTGTAAGACTTTGAAGAGGCTTGCATTAGCCAATTTGACAAAATCTAAATGGGTGCAACACTATAACCTGCTCAAGGATGTCAAGCGGAAACAAATTACAGGAGGGAAGGGAGTTGCAGCAGGATCCACTCTCCTTGGGTTGACTAATTTGTTACCTGCAAAGAGACCACATGATGGCCAAAATCAGAACTTTCCAGAGCCGAAAGCCACGATGAAAAGCCCTAAAAGGGTGGTCATGAAGGCTAGCTATGAATCAAAGAACCTCATCGACAATGACAGCTCTTGCTTCAGTCCTAGAAGCCTATTTGCTTTCCCTCCCGACAAAAGCTCCCTTATGCTGGACTATTTCCAGTTCACTGATGACAGTTTTGATCAAGATCTGCTGTTGGATGTGCCATCCAATGGATCCTTTCCACAGGCAGAGCTTCTACACCAATCATCAAGTTTTGGTTCCCAACAGGCAAGCACTAGTAGTAGCATAGTATACCCACATTTTAATCATCCCTGA 1638 0.4475 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYIPLHARAEPDDFEDYTISKVNTVSIKAKVAKLQKRKQSYDNVIVEGEAPDYDQNFRRVLEEDTSNRSSSGSAISYSESCAQFGGTDASELTGSAQSIVWDTLVPSRKRTCVNRPKPSSVEKLTKDLCSILHEQQSSYFSGSSEEDLLFESEAPMVSVEIGHGSVLIKHPNTAAREEESEASSLSIDNKPNIVNEAYSGSASLRVHTDSKGVSFPSVGVDKIKKPMGQVTQQEHTKRDKSHHEKLQILRNHNSPLRSIDLKDVVSFEEFVRHFTLEEQQLLMKYLPSMDTTRLPDSLKNMFDSPQFAENLSSFQQLLLEGVFDLSFLGVNSEDCKTLKRLALANLTKSKWVQHYNLLKDVKRKQITGGKGVAAGSTLLGLTNLLPAKRPHDGQNQNFPEPKATMKSPKRVVMKASYESKNLIDNDSSCFSPRSLFAFPPDKSSLMLDYFQFTDDSFDQDLLLDVPSNGSFPQAELLHQSSSFGSQQASTSSSIVYPHFNHP* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00888 545 Gene3D - 3 85 IPR013088 GO:0006355|GO:0008270
Eupl08g00888 545 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Eupl08g00888 545 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Eupl08g00888 545 CDD ZnF_GATA 6 54 IPR000679 GO:0006355|GO:0043565
Eupl08g00888 545 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Eupl08g00888 545 Gene3D - 290 392 IPR038108 -
Eupl08g00888 545 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 43 - -
Eupl08g00888 545 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Eupl08g00888 545 Pfam Asx homology domain 280 367 IPR028020 -
Eupl08g00888 545 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 295 407 IPR044867 -
Eupl08g00888 545 PANTHER OSJNBB0038F03.10 PROTEIN 1 537 IPR044589 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00888 Eupl-Chr8 25198663 25206499 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00888 1 522 C2C2-Gata Transcription Factor Family AT4G17570 52.919 9.67e-158 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Eupl08g00888 ASXH 5.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00888 - - nnu:104589451 803.127