Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00832 ATGTTGGGAATCAATCACAACTTCTTCGAGTTTTCCGAGCCGCGATTCACGGACATCAGACAGCCCAACTTCTCCGATGGACACAATGTGATCTTTGACACGGATGCATTTCGCATGTACACATTCAAGATCAAGCGATGTGCAAAGACCCGAAGCCACGATTGGACTGAATGCCCATTTGCTCACCGTGGTGAGAAAGCAAGGCGCCGTGATCCACGTAAATTCAATTACATGGCCATTGCGTGCCCCGAGTTTCGTACAGGAGAATGCAAGAAAGGTGAGTTATGCGAGTTTGCACATGGGGTCTTTGAGTTCTGGTTGCACCCGGCAAGGTATCGAACGCGTTTATGCAATGCTGGGAGGTTTTGCCAACGAAAGGTATGTTTCTTTGCTCATGCACCGGAGCAACTCCGACCGGAGACTAAATATAAATGCCATTATACTTATCGCGCTCGCATGGAGAGATCAAGTGGAGGAGAGAGAATTGCAGACAATTCGAACAGTGGAAAGAAAATGATAGCCTCGCTGCCCGCATCGTCGACAAGAAATGAGAATCCTTTGGGAAAGACTTGGGAGTTCATTGAAACTTTGAGGGGACTAAAGATAGGGAATGGCAATGAAGGGGAGAGAAATTTTGGTTGGGATGTATCGGCGCCGGATTTGCCCAATATTGATTGGGTTTCTGAGTTGGTGAAATGA 699 0.4735 MLGINHNFFEFSEPRFTDIRQPNFSDGHNVIFDTDAFRMYTFKIKRCAKTRSHDWTECPFAHRGEKARRRDPRKFNYMAIACPEFRTGECKKGELCEFAHGVFEFWLHPARYRTRLCNAGRFCQRKVCFFAHAPEQLRPETKYKCHYTYRARMERSSGGERIADNSNSGKKMIASLPASSTRNENPLGKTWEFIETLRGLKIGNGNEGERNFGWDVSAPDLPNIDWVSELVK* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00832 232 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 82 101 IPR000571 GO:0046872
Eupl08g00832 232 ProSiteProfiles Zinc finger C3H1-type profile. 76 103 IPR000571 GO:0046872
Eupl08g00832 232 PANTHER UNKEMPT FAMILY MEMBER 22 179 IPR045234 -
Eupl08g00832 232 Gene3D - 78 140 - -
Eupl08g00832 232 SMART c3hfinal6 76 102 IPR000571 GO:0046872
Eupl08g00832 232 SMART c3hfinal6 111 134 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00832 Eupl-Chr8 23743215 23744002 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00832 21 231 C2H2 Transcription Factor Family AT5G07500 48.357 2.84e-69 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Eupl08g00832 zf-CCCH 4.6e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00832 - - nnu:104610532 305.064