Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00830 ATGAAGACGATGGTTCTTGAATCAAAGAATGGGAAGAGGAACAGAGGGGGAGTGATCTTTAGTGGTTCGAATTCCATTACCAACTCAATTTTTCCTCATAATAGATCTCACAGTCAAGCTGATCGACACAATGCCGCTATAATGAGTTTCGATAGAAAAATAAGTACAAAAGGAAGACTTGTAATTGGGGTGGAGAAAGCCGAAAATGGTTGTTCTAGCAGGAAGAGATATCGGACACAACGACGAATTCGTCGTTCAGAGAAGGTACGGGATGAAGATGAAGAGTATTCGCCTTACAAACGAGGTAATTCATCTGGTCGCAAACGAAGGAATTCAGTTCATCGAAGAAACAATAAAACAAGACGAAAGGGTATAGTATTGGTTCAGAGCTCTGGTGAAGCGGCAGATGAAGAATCCAGTGATGATTTTACTCCATATACTGGAAAAAGGACAATTCTATCCTGGTTGATAGATTCGGGAACCGTTCTGTTGAATGGGTGCGTTCAGCATTTGGATTGGACCAACATGCGAACATTGCTGACGGGAAAGATTACAAAGGATGGCCTTTTGTGCGATTGCTGTCAAAGAATTATGACAGTAGCAGAATTTGAGGTTCATGCTGGATGCAATCTTTGTCAGCCATACCAGAACACGTTCCTCGAAACAGGTAATGGGACGGGTATCTCCTTTTTGCAGTGTCAATTGAATGCATGGCATCAACTAGAGAAATCTACGCACTGTGGTTCCCATATTGTGGAGTGTCATATGAATGACGATGACCCAAGTGATGATCTTTGTGGTATCTGTGCGGATGGAGGGGACTTGATCTGTTGTGATAGCTGTCCTTCTACCTTCCATCAGAGCTGCTTGGGTATTCAGATGCTTCCTCAAGGTGACTGGCACTGTGCAAACTGCATATGCAAATTCTGCAGGCTAGTTGACCCTAGTACGTCTCAACTGCTTACATGTCGTCAATGTGAGAAGAAATATCATCAAGGGTGTACTCAGGAAACAGAAGTCATGGCTGTTGGTTCGAATGGTTTTTCTTTCTGTGGGGATAACTGCAGAAAGCTCTTTGAACAATTGAAGAAACTTATTGGGGTTAAGAATGTGCTAAAAAATGGCCTTTCTTGGACTCTTCTTCAAAACCTAGATCATGATCAAAGGGCATCACTCAATGGACTATCTGCAAGGGCCGAATGCTATTCTAAGCTCGCTATTGCTTTTTTAGTTATGGAAGAATGTTTCTCTCCCATAACTGATAGGCGCAGCGGTCGAAACATTATCCAAAGTGTAATTCTTAGCCTTCGATCGAACACTAACCGGCTCAATTTTAGTGGATTTTACACTGCTGTTTTAGAGAGGGGTGATGAAATTATCTCTGCAGCATCCATCAGGATTCATGGAACCAAGCTAGCCGAGATGCCTTTCATTGGGACTCGTAATGCCTATAGGTGTCAAGGGATGTGCCATCAACTTCTAAATGCAATTGAATCTACTCTCTGCTCCCTTAATGTTAAAAAACTGATCATACCTTCCATCTATGAACGCGTGGATAAGTGGACCAGAGGTTTTGGTTTCAAGCCTATTGAGAAATCACTCAAGCAAGAAATGAGCTCCATGAATTTGTTGATGTTCCCAGATACGGTTCTGCTGCAGAAGCCCTTATTGAAGCATGATGCCAGTGAAGGAAATAAAACAGCTGTTGCAGCTGTGGAGGCCATAGAGCTCCAAAGCAACGATCATCAAAATACACTCAATGTAGTAAATAAATCTCTTTTGCCTGATCTGAATTTTCCTCCTCCCCGTGATAATGGCATAACGTGGGATGGGAAACCACGTTATGGAGTGTTCTTAACACTAGACTCCCAGGGTGGTCTCAAAATCACTCGATTGCGCATCCGAGACTAA 1911 0.427 MKTMVLESKNGKRNRGGVIFSGSNSITNSIFPHNRSHSQADRHNAAIMSFDRKISTKGRLVIGVEKAENGCSSRKRYRTQRRIRRSEKVRDEDEEYSPYKRGNSSGRKRRNSVHRRNNKTRRKGIVLVQSSGEAADEESSDDFTPYTGKRTILSWLIDSGTVLLNGCVQHLDWTNMRTLLTGKITKDGLLCDCCQRIMTVAEFEVHAGCNLCQPYQNTFLETGNGTGISFLQCQLNAWHQLEKSTHCGSHIVECHMNDDDPSDDLCGICADGGDLICCDSCPSTFHQSCLGIQMLPQGDWHCANCICKFCRLVDPSTSQLLTCRQCEKKYHQGCTQETEVMAVGSNGFSFCGDNCRKLFEQLKKLIGVKNVLKNGLSWTLLQNLDHDQRASLNGLSARAECYSKLAIAFLVMEECFSPITDRRSGRNIIQSVILSLRSNTNRLNFSGFYTAVLERGDEIISAASIRIHGTKLAEMPFIGTRNAYRCQGMCHQLLNAIESTLCSLNVKKLIIPSIYERVDKWTRGFGFKPIEKSLKQEMSSMNLLMFPDTVLLQKPLLKHDASEGNKTAVAAVEAIELQSNDHQNTLNVVNKSLLPDLNFPPPRDNGITWDGKPRYGVFLTLDSQGGLKITRLRIRD* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00830 636 Gene3D - 415 545 - -
Eupl08g00830 636 CDD PHD_SF 306 351 - -
Eupl08g00830 636 MobiDBLite consensus disorder prediction 84 102 - -
Eupl08g00830 636 MobiDBLite consensus disorder prediction 1 20 - -
Eupl08g00830 636 SMART PHD_3 307 356 IPR001965 -
Eupl08g00830 636 SMART PHD_3 265 306 IPR001965 -
Eupl08g00830 636 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 407 557 IPR000182 GO:0016747
Eupl08g00830 636 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 252 317 IPR013083 -
Eupl08g00830 636 MobiDBLite consensus disorder prediction 69 141 - -
Eupl08g00830 636 SUPERFAMILY FYVE/PHD zinc finger 255 308 IPR011011 -
Eupl08g00830 636 ProSiteProfiles Zinc finger PHD-type profile. 263 308 IPR019787 -
Eupl08g00830 636 PANTHER PHD FINGER PROTEIN 12 53 583 IPR042163 GO:0003714|GO:0045892
Eupl08g00830 636 CDD NAT_SF 452 511 - -
Eupl08g00830 636 MobiDBLite consensus disorder prediction 103 122 - -
Eupl08g00830 636 CDD PHD4_NSD 266 305 - -
Eupl08g00830 636 SUPERFAMILY FYVE/PHD zinc finger 306 340 IPR011011 -
Eupl08g00830 636 Pfam Tify domain binding domain 182 235 IPR032308 -
Eupl08g00830 636 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 443 533 IPR016181 -
Eupl08g00830 636 Pfam PHD-finger 266 308 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00830 Eupl-Chr8 23736959 23741681 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00830 113 560 PHD Transcription Factor Family AT1G05380 49.123 4.87e-148 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Eupl08g00830 TDBD 5.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00830 - - ming:122062946 543.888