Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00826 ATGTCTTTCTTAAACTTCTTGGCTTTCAGGGATTCTATGGAGAAGGAGATGGTAAGTAGTACTATTTCCAACCCAGGAAGAAATATAATCGCAGTCGTTGTGGGTTCAAACAGCAGCAACAACCCATGTCATCCGAATAAGCGTCCGAGAGACGACGACAATTCTGTGGCTTTCCCAAGATACAAAGGGGTGGTCCTGCAGCAAAATGGTCACTGGGGGGCACAAATCTATGCCAACCACCAAAGAATCTGGCTTGGGACATTCAGAACGGAGGCGGCAGCAGCGATTGCTTATGATAGTGCGTCTATCAAGCTTCGAAGAGGAGATTCTCACCGCAATTTCCCATGGACTGACCTCAACATCCTTCATGAGCCTGACTTCCAAGATCTCCACACCACGGAAGATGTGCTAAACATGATCAAGGATGGATCCTACCAGTCCAAACTAACAGAGTTCATAGTGAGCCGATCTCCATTCATTGTAAGAGAAGTGAGGGAGCAAGTGATCAACAAACAAGAGGTCTTGTGTGAACATCTCTTTCGTAAAGAGCTGACGCCGAGCGATGTTGGTAAGCTCAACAGGCTTGTCATCCCGAAGAAACATGCTTTAACATACTTACCTCAGGTTTCTGAAGTTAGTTCCAAAGGAAATGAAGATGGTGGTAGGGTCGAGTCTGTTGAACTACCTTTCTTTGATAGGCAGCTTAAGTCATGGAAGTTCCGATATTGTTATTGGAAGAGTAGCCAGAGTTTTGTGTTTACAAAAGGCTGGAATCAGTTCGTGAAGGAAAAGGAATTGAAGGTGAGTGATACCATTACCATCTACAGGTATGAGAATAAACCAGAGTTAAAAAATGACCCAACCTTTTACTTGATTGATATACACTATAATATTGGCAAAAGAAATGATAATTTTGATAGAGGGAAGCTTGAGCTGCAACCTGGTTTGAGAGGGAATTTCGAATTTGGATCAGATGGGGAAGACAAGAAACGAGAGGAGGAGAAGAAGAAGAAGAAGAAGAAGAAGAGTGTTAGACTATTTGGTGTGCAGATAGGTTGA 1059 0.4325 MSFLNFLAFRDSMEKEMVSSTISNPGRNIIAVVVGSNSSNNPCHPNKRPRDDDNSVAFPRYKGVVLQQNGHWGAQIYANHQRIWLGTFRTEAAAAIAYDSASIKLRRGDSHRNFPWTDLNILHEPDFQDLHTTEDVLNMIKDGSYQSKLTEFIVSRSPFIVREVREQVINKQEVLCEHLFRKELTPSDVGKLNRLVIPKKHALTYLPQVSEVSSKGNEDGGRVESVELPFFDRQLKSWKFRYCYWKSSQSFVFTKGWNQFVKEKELKVSDTITIYRYENKPELKNDPTFYLIDIHYNIGKRNDNFDRGKLELQPGLRGNFEFGSDGEDKKREEEKKKKKKKKSVRLFGVQIG* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00826 352 ProSiteProfiles AP2/ERF domain profile. 60 115 IPR001471 GO:0003700|GO:0006355
Eupl08g00826 352 Pfam AP2 domain 59 107 IPR001471 GO:0003700|GO:0006355
Eupl08g00826 352 SMART B3_2 180 298 IPR003340 GO:0003677
Eupl08g00826 352 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 60 351 IPR044800 GO:0003700
Eupl08g00826 352 Gene3D - 175 297 IPR015300 -
Eupl08g00826 352 SUPERFAMILY DNA-binding domain 60 116 IPR016177 GO:0003677
Eupl08g00826 352 SUPERFAMILY DNA-binding pseudobarrel domain 178 280 IPR015300 -
Eupl08g00826 352 SMART rav1_2 60 121 IPR001471 GO:0003700|GO:0006355
Eupl08g00826 352 FunFam AP2 domain-containing protein RAP2.8 59 116 - -
Eupl08g00826 352 MobiDBLite consensus disorder prediction 318 352 - -
Eupl08g00826 352 CDD B3_DNA 178 276 IPR003340 GO:0003677
Eupl08g00826 352 Gene3D AP2/ERF domain 60 116 IPR036955 GO:0003700|GO:0006355
Eupl08g00826 352 CDD AP2 59 117 IPR001471 GO:0003700|GO:0006355
Eupl08g00826 352 ProSiteProfiles B3 DNA-binding domain profile. 180 297 IPR003340 GO:0003677
Eupl08g00826 352 Pfam B3 DNA binding domain 180 278 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00826 Eupl-Chr8 23647629 23648687 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00826 60 299 RAV Transcription Factor Family AT1G51120 55.385 6.89e-92 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Eupl08g00826 B3 3.1e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00826 K09287 - ming:122059756 358.221