Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00815 ATGGCGGCACCAAACGAAGCTTCAGCTCTAGATCTCATCAGACAACACCTCCTCAGCGATTTCGCCTCTACCGAAAGCTTCCTCACTGGCCTTACCATCTGTACCTCGAAAATCTTCGGAAATGAGTCAAATGACTCAGTTAATGGAGACAAACAAGAAATTTTGTCTTCTCCATCTCATTATCTCTGTTCACGAGCTCGAACCTCTGAATCTCTGGTTTTAAAGAAGAAAAATGAGATCTTTAGAAATGTTTCTCAGTCATCATCATCGATGTCTTCTGAACAGGAAATTGAAATTTCTGATTACTTGAAACTGAATGAAGACGACGACGGAAGTCTCTTTGAGTTCGTGCCTAATTCGATCCCTTTCAAGGCGGAACATAACGATTTCTTCCAATTTGAAACAAAACCTCATATTTCTGATTTCAGTAAGCCAAAAACCTTAACTTCGAGTTATCAATCTAGCGTCAACGATCGCCGACCTTCGTTGAAGATCTCTCTTCCACCCGTGAAGAAACTCGAGTGGTCCGACCTCACCGAACAACCTCAACCGGTAGCCACAGTTCCTGACCAAAAACTGTCAGATTCTGGCGAGAAGAGACACTACAGAGGCGTGCGACAACGTCCATGGGGGAAATTTGCTGCCGAGATTCGAGACCCCAACCGTCGAGGATCTAGAGTTTGGCTCGGAACCTTCGAAACCGCCATCGAAGCTGCTAAAGCTTACGATCGTGCAGCCTTCAAGATGCGTGGAAGCAAAGCGATCCTTAACTTCCCTCTCGAAGCCGGAAACCCATCTGACCCACCGGCGAACAATATTAGCCGGAAAAGACGCAGAGAAAATGAAATAGAAGAGCAAGAACAAGTAGTAGAGATAGAGACAAAGCAGTTAAAGAAGGAGACAGCGCCGGAATCTGACTTCACGGCGACAGTTCCACCTGTTTGTCCGTTAACGCCGTCATGTTGGACGACCGTTTGGGAAGGCGTGGACGTTAAGGGAATCTTTGACGTCCCCCCACTGTCGCCATTATCTCCACATACGTCATTATATCATCCGCAGCTTATGGTCATCTAA 1074 0.4628 MAAPNEASALDLIRQHLLSDFASTESFLTGLTICTSKIFGNESNDSVNGDKQEILSSPSHYLCSRARTSESLVLKKKNEIFRNVSQSSSSMSSEQEIEISDYLKLNEDDDGSLFEFVPNSIPFKAEHNDFFQFETKPHISDFSKPKTLTSSYQSSVNDRRPSLKISLPPVKKLEWSDLTEQPQPVATVPDQKLSDSGEKRHYRGVRQRPWGKFAAEIRDPNRRGSRVWLGTFETAIEAAKAYDRAAFKMRGSKAILNFPLEAGNPSDPPANNISRKRRRENEIEEQEQVVEIETKQLKKETAPESDFTATVPPVCPLTPSCWTTVWEGVDVKGIFDVPPLSPLSPHTSLYHPQLMVI* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00815 357 CDD AP2 201 259 IPR001471 GO:0003700|GO:0006355
Eupl08g00815 357 Gene3D AP2/ERF domain 200 261 IPR036955 GO:0003700|GO:0006355
Eupl08g00815 357 PANTHER DNA-BINDING DOMAIN 157 289 IPR044808 GO:0003700|GO:0009873
Eupl08g00815 357 SUPERFAMILY DNA-binding domain 201 260 IPR016177 GO:0003677
Eupl08g00815 357 Coils Coil 276 300 - -
Eupl08g00815 357 Pfam AP2 domain 201 251 IPR001471 GO:0003700|GO:0006355
Eupl08g00815 357 FunFam Ethylene-responsive transcription factor 2 200 261 - -
Eupl08g00815 357 PRINTS Ethylene responsive element binding protein signature 241 261 IPR001471 GO:0003700|GO:0006355
Eupl08g00815 357 PRINTS Ethylene responsive element binding protein signature 202 213 IPR001471 GO:0003700|GO:0006355
Eupl08g00815 357 MobiDBLite consensus disorder prediction 260 284 - -
Eupl08g00815 357 SMART rav1_2 201 265 IPR001471 GO:0003700|GO:0006355
Eupl08g00815 357 ProSiteProfiles AP2/ERF domain profile. 201 259 IPR001471 GO:0003700|GO:0006355
Eupl08g00815 357 MobiDBLite consensus disorder prediction 178 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00815 Eupl-Chr8 23391758 23393616 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00815 161 356 AP2-EREBP Transcription Factor Family AT5G51190 49.020 5.05e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Eupl08g00815 AP2 2.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00815 K09286 - nnu:104598426 377.867