Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00790 ATGAAACTATTCTCAATGTTGTTTTTTCCTTTATGGGTACAGAGAACTGGGGGAGTAAGGGAGGGAATGGAAATCCGTGAAGTAGAAGATGAACTTGCGTTGCCGCTTCCTCCGTCCTTAACTGTTGTTGTGGCTGTCAATGGAAGTAGAAAAAGCAAATATGCAGTTAAGTGGGCGCTGGAGAAGTTTGTTCCTGAGGCCAGAGTTTTGTTCAAGTTGTTACACATCCGAGCAAGGGTCACATCAGTTCCTACACCAATGGGAAATTATGTTCCAATTTCACAAGTGCGAGATGATGTAGCTGCTGCGTATATGAAGGAAATGGAATGGCGAACCAGTAGAATGCTTCTCCCATACAAGAAGATGTGTATAGAGAAAAAGGTGGAAGTAGAGACTGTGGTGATTGAAGCAGATGATGTAGCACTGGCAATATCAGGACAGGTTGCTATGCTCACAATCAGCAAGCTTGTCATAGGAGCTTCATCCCATAGCATGTTTACAAGGAAATTTAAGGGCTCTACTATATCGTCAAGAATATCGGAATGCACTCCAAGCTTTTGTACAGTTTATGTTGTTTCAAAGGGAAAATTGTCGTCAGTGCGTCCATCCACTTCAGAGTCAAATGGAAGCATCAAAGATGAAAATAGTGATTCAACTGGTTCTACCAACAGTTGCTCAAGTTATTCTTTCAGCTCACAAACAGACCCAGGCTCAGCTGCTTCATATTCTCATTTGCATTGTCCTTCTCTCCCACTTCAGCGTTTGCAAGCTCTTTCAACTGTAAATCAGATCCTTCTTAATACAAGATCAAGTTCAACTGATAGCCACCATTCTAGAATTCTATCTCTGAATATTGAGGATAGGGAGGATGATCTAAGTCCCTGCTCCAGTAACTCAGATATTCAATACGCTGGAAGTAGGGCTTCTAGTTTCAGAAGCTTTCAAACAGATTATCAGTCATGGAATTCTGAGCGAGCATCCACTTCAGATGCTCCAACAGATTCTTTTTCATCAGAGAGACAGATTGATATTAATTTTGAGCTGGAAAGGCTTAAAATTGAACTGAGGCACGCTAGAGGAATGTATGCAGTAGCTCAAAATGAGACGATCAATGCTTCTCGCCAACTAAACAATCTAAGTAAACGGCGAATGGAGGAAGCAACTAAGCTCAAGGAGATAACCTTCAAGGTGGAGATGGCTAGAGAATTAGCAAGACAAGAGACGGAGAAACATGAAGCTGCGAAAAGGGAGGCTGAGTTTGTTAGAGAATGTGTCGGAAGAGAAGCCTTGCAAAGGAAAGAAGCGGAGCATAAAGCCACTCGTGATGCCAAAGAGAAAGAAAGGCTTGAGAAGGCACTTGAGGCTCCTGTTCAGAAGTTCACTTGGGAAGAGATCGTGTTAGCTACGTCATCCTTCTCTGATGATCTTAGGATCGGAATGGGAGGATATGGGACTGTTTATAAGTGTAGTTTGCATCATGTCACTGCAGCAGTGAAAGTCCTCCACTCAAAAGATAACAAGAGCAAGCAGTTTCATCAAGAGCTTGAAATTTTGAGCAAAATTCATCATCCCCATTTGCTTCTTCTTCTTGGAGCCTGTCCTGATCGTGGTTGCTTAGTTTATGAATACATGGAGAATGGTAGTCTGGATGACAGGTTACTTCGGAAAAATAACACGCCCGCAATCCCATGGTTTGAGCGATATCGAATAGCTTGGGAAGTAGCCTCTGCACTGGTTTTCCTACATAATTCGAAGCCAAAGCCAATCATCCATCGTGATCTGAAACCTGCAAACATCTTGCTCAATCATAACTTTGTGAGCAAGATCGGTGATGTAGGTCTTTCCATATTGCTTCCTTCCACCAATTCATCCGTCTCTAACATCTACAAGGACAGTGGCCCCGTTGGGACACTTAGCTACATGGATCCCGAGTACCAAAGGAGTGGGTTGGTCTCACCAAAGTCTGATGTTTATGCATTTGGAATGGTGATCCTGCAATTGCTGACTGCAAAACCCGCCATGGCACTTGCCCACATTGTGGAAACTGCATTGGAAGATGGCCACTTGATGGACATTTTAGATTCTGAGGCTGGGAATTGGCCAATCAAGGAGACTCAGGAACTGGCAGTGTTGGGACTGAGCTGTGCAGAACTGAGACGTTGTGACAGGCCTGATTTGAAAGTTCAAATTCTTCCAATTCTGGAGAGATTGAAAGACATTGCTGATAAGGCCCGAGATTCGACTCCCAGTGTTCAATCTGTGCCTCCAAATCACTTCATTTGCCCGATACTTCAGGACGTGATGGACGACCCTTGTGTTGCTGCAGATGGATATACATATGACCGTAAAGCAATAGGCACATGGATCGAGGAGAATGACAAATCACCAATGACTAATTTGTCCCTACCCAATAAGAATCTCATACCCAATTATACCCTTCTTTCTGCAATTGTGGAGTGGAAGTCCAGAAAACAATGA 2478 0.4342 MKLFSMLFFPLWVQRTGGVREGMEIREVEDELALPLPPSLTVVVAVNGSRKSKYAVKWALEKFVPEARVLFKLLHIRARVTSVPTPMGNYVPISQVRDDVAAAYMKEMEWRTSRMLLPYKKMCIEKKVEVETVVIEADDVALAISGQVAMLTISKLVIGASSHSMFTRKFKGSTISSRISECTPSFCTVYVVSKGKLSSVRPSTSESNGSIKDENSDSTGSTNSCSSYSFSSQTDPGSAASYSHLHCPSLPLQRLQALSTVNQILLNTRSSSTDSHHSRILSLNIEDREDDLSPCSSNSDIQYAGSRASSFRSFQTDYQSWNSERASTSDAPTDSFSSERQIDINFELERLKIELRHARGMYAVAQNETINASRQLNNLSKRRMEEATKLKEITFKVEMARELARQETEKHEAAKREAEFVRECVGREALQRKEAEHKATRDAKEKERLEKALEAPVQKFTWEEIVLATSSFSDDLRIGMGGYGTVYKCSLHHVTAAVKVLHSKDNKSKQFHQELEILSKIHHPHLLLLLGACPDRGCLVYEYMENGSLDDRLLRKNNTPAIPWFERYRIAWEVASALVFLHNSKPKPIIHRDLKPANILLNHNFVSKIGDVGLSILLPSTNSSVSNIYKDSGPVGTLSYMDPEYQRSGLVSPKSDVYAFGMVILQLLTAKPAMALAHIVETALEDGHLMDILDSEAGNWPIKETQELAVLGLSCAELRRCDRPDLKVQILPILERLKDIADKARDSTPSVQSVPPNHFICPILQDVMDDPCVAADGYTYDRKAIGTWIEENDKSPMTNLSLPNKNLIPNYTLLSAIVEWKSRKQ* 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00790 825 CDD STK_N 41 195 - -
Eupl08g00790 825 PANTHER OS02G0152300 PROTEIN 42 818 - -
Eupl08g00790 825 Coils Coil 396 417 - -
Eupl08g00790 825 SMART Ubox_2 758 820 IPR003613 GO:0004842|GO:0016567
Eupl08g00790 825 CDD RING-Ubox_WDSUB1-like 756 810 - -
Eupl08g00790 825 ProSitePatterns Protein kinases ATP-binding region signature. 478 499 IPR017441 GO:0005524
Eupl08g00790 825 Pfam Protein tyrosine and serine/threonine kinase 477 726 IPR001245 GO:0004672|GO:0006468
Eupl08g00790 825 MobiDBLite consensus disorder prediction 199 227 - -
Eupl08g00790 825 Gene3D Phosphorylase Kinase; domain 1 432 543 - -
Eupl08g00790 825 ProSiteProfiles U-box domain profile. 754 825 IPR003613 GO:0004842|GO:0016567
Eupl08g00790 825 ProSiteProfiles Protein kinase domain profile. 472 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl08g00790 825 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 41 192 - -
Eupl08g00790 825 Gene3D HUPs 38 200 IPR014729 -
Eupl08g00790 825 Pfam U-box domain 756 824 IPR003613 GO:0004842|GO:0016567
Eupl08g00790 825 SMART serkin_6 472 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl08g00790 825 SUPERFAMILY RING/U-box 746 824 - -
Eupl08g00790 825 Coils Coil 427 452 - -
Eupl08g00790 825 Pfam Universal stress protein family 41 181 IPR006016 -
Eupl08g00790 825 ProSitePatterns Serine/Threonine protein kinases active-site signature. 589 601 IPR008271 GO:0004672|GO:0006468
Eupl08g00790 825 SUPERFAMILY Protein kinase-like (PK-like) 454 726 IPR011009 -
Eupl08g00790 825 Coils Coil 348 382 - -
Eupl08g00790 825 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 755 825 IPR013083 -
Eupl08g00790 825 Gene3D Transferase(Phosphotransferase) domain 1 544 754 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00790 Eupl-Chr8 22260923 22291215 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00790 39 824 U-box Gene Family AT4G25160 54.446 0.0 867
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Eupl08g00790 PK_Tyr_Ser-Thr 6e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00790 - - nnu:104598441 1124