Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00784 ATGACGAGGAGGTGCTCGCATTGCAGTCACAATGGGCATAACTCGAGGACTTGCCCTAATAGGGGGGTCAAACTGTTTGGGGTGCGGCTAACGGACGGATCGATCAGGAAGAGTGCCAGCATGGGGAACCTAACGCACTACACCGGATCAAATAACGGTAATCACCACAACGGCAGCAACAATCCTGGTTCGCCTGGTGAGACGCCGGACCATGGGGCGGCTGCAGACGGCTACGCTTCGGATGATTTCGTCCAGGGCTCTTCTTCGAGTTGCCGCGAACGAAAGAAAGGTGTACCATGGACTGAAGAGGAACACAGGATGTTTCTACTTGGTCTGCAGAAACTTGGCAAAGGTGATTGGCGTGGGATAGCACGTAATTATGTAATATCAAGGACACCAACTCAGGTGGCCAGCCATGCTCAGAAATATTTTATCCGGCAAACCAACATGTCCAGAAGAAAGAGAAGGTCCAGCCTGTTTGATATCATAGCGGATGAAGCAGTTGACACTCAAGTTGTATCACAGGAACTCTTCCCCATCTGTCATCCACAAGCTGAAATGCAAAGCAACAACCAGTTGCCAGCTCCTCCAGCTCTGGATGAAGAATGTGAATCGATGGATTCTACCAATGACAATGATGGAGAAGCCGTCCTTCCGAAGCCAGAGAGTTCACAGTTCAGTTACCCAGTAATATTTCCTGCTTGCTTCTCATCATTCTTGCCATTTTCCTTCCCATTTTGGTCGGGATACAATACAGAGGCGACGACTAAAGAGCCGCATGAAGTTGTTAAGCCAACAGCAATACATTCAAAGAGTCCAATCAATGTTGACGAGCTGGTAGGCATGTCAAAATTGAGCCTAGGAGAATCCCTTGGTCACTCGGGACCTTCATCTCTCTCGCTAAAATTGCTCGAAGGGACCACCAGGCAGTCAGCTTTCCATGCTAACCCTGAGTCGGGTGACTCAAGTATGAACTCAAGCAGCAGTCCAATTCATGCAGTCTAA 1005 0.4905 MTRRCSHCSHNGHNSRTCPNRGVKLFGVRLTDGSIRKSASMGNLTHYTGSNNGNHHNGSNNPGSPGETPDHGAAADGYASDDFVQGSSSSCRERKKGVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVISRTPTQVASHAQKYFIRQTNMSRRKRRSSLFDIIADEAVDTQVVSQELFPICHPQAEMQSNNQLPAPPALDEECESMDSTNDNDGEAVLPKPESSQFSYPVIFPACFSSFLPFSFPFWSGYNTEATTKEPHEVVKPTAIHSKSPINVDELVGMSKLSLGESLGHSGPSSLSLKLLEGTTRQSAFHANPESGDSSMNSSSSPIHAV* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00784 334 MobiDBLite consensus disorder prediction 188 213 - -
Eupl08g00784 334 SMART sant 96 146 IPR001005 -
Eupl08g00784 334 NCBIfam myb-like DNA-binding domain, SHAQKYF class 95 147 IPR006447 GO:0003677
Eupl08g00784 334 Pfam Myb-like DNA-binding domain 99 144 IPR001005 -
Eupl08g00784 334 FunFam transcription factor MYB1R1 98 149 - -
Eupl08g00784 334 MobiDBLite consensus disorder prediction 37 97 - -
Eupl08g00784 334 ProSiteProfiles Myb-like domain profile. 92 144 IPR001005 -
Eupl08g00784 334 MobiDBLite consensus disorder prediction 1 21 - -
Eupl08g00784 334 Gene3D - 98 150 - -
Eupl08g00784 334 CDD SANT 99 144 IPR001005 -
Eupl08g00784 334 SUPERFAMILY Homeodomain-like 94 149 IPR009057 -
Eupl08g00784 334 MobiDBLite consensus disorder prediction 313 334 - -
Eupl08g00784 334 PANTHER TRANSCRIPTION FACTOR KUA1 3 270 - -
Eupl08g00784 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 148 IPR017930 -
Eupl08g00784 334 MobiDBLite consensus disorder prediction 37 66 - -
Eupl08g00784 334 ProSiteProfiles SANT domain profile. 100 148 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00784 Eupl-Chr8 21953250 21978637 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Eupl08g00784 Myb_DNA-binding 1.2e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00784 - - nnu:104598450 543.117