Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00782 ATGGAAGGTTTTCAGAATCTAACGGAAAATGGTTGTAGTGCAGGTGGAGCTTGTGGATATGAAAAGGCTGTGTCACAACCTCCTTTCTCTTCTATGGTTACAGGAATAGGTCCATCTCTTTATAAGTCTGGAACAGAATGTGGAGCTTGTTATCAGGTGAAATGCACCAGCACCACACATCCATCGTGTTCCGGTGATCCAGTGAGGGTGGTGATCACCGATTTTTGCCCCGGGGGTCCTTGTGTATCAGAATCTGCCCATTTCGATCTCAGCGGAACTGCATTTGGGGCCATGGCTATTCCTGGCCATGAAGATCAGTTACGTGATGCTGGAGTCTTGGAAATCCGTTATGCACGTGTTGCATGTGATTATTCAGGCAAGACCGTGGCATTCCATGTTGATCGAGGCTCCAATCCCAGCTACTTCTCTGTGGTTGTCGAGTTTTTAGAGGGAGATGGAGATCTTGCTGGTGTTGATCTAAGTGAGGCTTCAACGGATTCTGACAAGTGGCGGGTGATGCAACAATCCTGGGGTGCTGATTGGAAGCTCGACGCTGGCTCAGAATTGCAAGCCCCATTTTCGATCCGCTTGACATCACAGTATTCTGGACAGACCCTAGTAGCAAGAAATGTAATTCCTGATGGGTGGAAGCCTGGTGCAACCTATCGATCGGTGGTTAACTACCTGTGA 690 0.4841 MEGFQNLTENGCSAGGACGYEKAVSQPPFSSMVTGIGPSLYKSGTECGACYQVKCTSTTHPSCSGDPVRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIPGHEDQLRDAGVLEIRYARVACDYSGKTVAFHVDRGSNPSYFSVVVEFLEGDGDLAGVDLSEASTDSDKWRVMQQSWGADWKLDAGSELQAPFSIRLTSQYSGQTLVARNVIPDGWKPGATYRSVVNYL* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00782 229 SMART dpbb_1 33 117 IPR007112 -
Eupl08g00782 229 SUPERFAMILY Barwin-like endoglucanases 11 126 IPR036908 -
Eupl08g00782 229 Pfam Lytic transglycolase 38 117 IPR009009 -
Eupl08g00782 229 Gene3D - 124 228 IPR036749 -
Eupl08g00782 229 PRINTS Major pollen allergen Lol pI signature 179 196 IPR005795 GO:0005576|GO:0019953
Eupl08g00782 229 PRINTS Major pollen allergen Lol pI signature 147 162 IPR005795 GO:0005576|GO:0019953
Eupl08g00782 229 PRINTS Major pollen allergen Lol pI signature 131 146 IPR005795 GO:0005576|GO:0019953
Eupl08g00782 229 PRINTS Major pollen allergen Lol pI signature 57 67 IPR005795 GO:0005576|GO:0019953
Eupl08g00782 229 Gene3D - 4 123 IPR036908 -
Eupl08g00782 229 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 15 127 IPR007112 -
Eupl08g00782 229 Pfam Expansin C-terminal domain 129 213 IPR007117 -
Eupl08g00782 229 PRINTS Expansin/Lol pI family signature 210 224 IPR007118 GO:0005576
Eupl08g00782 229 PRINTS Expansin/Lol pI family signature 170 184 IPR007118 GO:0005576
Eupl08g00782 229 PRINTS Expansin/Lol pI family signature 14 32 IPR007118 GO:0005576
Eupl08g00782 229 PRINTS Expansin/Lol pI family signature 37 55 IPR007118 GO:0005576
Eupl08g00782 229 PRINTS Expansin/Lol pI family signature 110 126 IPR007118 GO:0005576
Eupl08g00782 229 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 140 224 IPR007117 -
Eupl08g00782 229 SUPERFAMILY PHL pollen allergen 127 224 IPR036749 -
Eupl08g00782 229 PANTHER EXPANSIN-B3 13 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00782 Eupl-Chr8 21581842 21582747 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00782 13 228 Expansin Gene Family AT1G65680 61.574 4.09e-92 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00782 - - vvi:100264455 376.326