Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00766 ATGAATTATATTACTCCTCGCTACACTTTAAACCACAGCGATGATCTGTTGTTCCAACAACACAAGATTCATCAAGATACGCTTCAAGTACTGCCTCCTTCTTCTCTGGATAGGCGCCATAATATTCTTCCTGTCAATCTGGATAAAAGCCGACGCCGAAAGTCATCAGATATTCCCGCCAAAAATGAAGCAGCAGCTGGTACTAATGATAATAATAAGAAGAAAATCATTCATAGAGATATCGAGCGACAGAGAAGGCAAGAGATGGCTACCCTTTACGCTTCACTTCGATCACTACTCCCTCTCGAACGTATCAAGGGAAAGCGATCGATCTCCGATCACATGAACGAGGCAGCTAATTATATACGACACCTAGAGAAGAAGATCCAGGAACTGAGTGACAAGCGAGAGGGACTGAAAAGATTTACAGGAGGAAGTTTATGTCCGTCGGATTGTGTTAGTGTTCAGCCTTGTTGGGCTGGAGTGGAGGTTGTTATTAGGACAGCCGGAGTACCTCTTTCTAGGTTGCTGGAGGTTTTTGTTAAAGAAGGATTAAGCGTCGTTAGTTGCCTTTCAACGAAAGTAAATGAGATGTCACTTCACACTATTCAGTCCGAGACACTATATGGGTTGACAGTGGGGTACTTAGTAACTGGAATTTTGGATGACTCGGGGAGATATTCTATTTCATATAATAAATCTAACTTAGATGAAGATGTAGATCTAAACTTGGATGAAGTTGATGATGTGAATGAGGATGCAGATGGTGTGTTTGGTGTGGCTATCTTGTCTGAAGATGAACTGGTTTTCATTTTTAATGGTTCTTTCTGTTTGCTTTGGAAGCATGTGATTGCCCCAGTTGTTTATCACCCTCCACCTTATAGACCCTCAATGTTTCCACAACCTCTAAACTTTCAACCTCAGCATGACAGCCCATTCAAAGATCCAATTCCAAGAGCAAAACCTAAGCCTAAACCCAAATCAACACAACCACAAAGGCATGAACCATGA 1011 0.4184 MNYITPRYTLNHSDDLLFQQHKIHQDTLQVLPPSSLDRRHNILPVNLDKSRRRKSSDIPAKNEAAAGTNDNNKKKIIHRDIERQRRQEMATLYASLRSLLPLERIKGKRSISDHMNEAANYIRHLEKKIQELSDKREGLKRFTGGSLCPSDCVSVQPCWAGVEVVIRTAGVPLSRLLEVFVKEGLSVVSCLSTKVNEMSLHTIQSETLYGLTVGYLVTGILDDSGRYSISYNKSNLDEDVDLNLDEVDDVNEDADGVFGVAILSEDELVFIFNGSFCLLWKHVIAPVVYHPPPYRPSMFPQPLNFQPQHDSPFKDPIPRAKPKPKPKSTQPQRHEP* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00766 336 SMART finulus 79 131 IPR011598 GO:0046983
Eupl08g00766 336 MobiDBLite consensus disorder prediction 45 59 - -
Eupl08g00766 336 Pfam Helix-loop-helix DNA-binding domain 75 126 IPR011598 GO:0046983
Eupl08g00766 336 MobiDBLite consensus disorder prediction 300 336 - -
Eupl08g00766 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 125 IPR011598 GO:0046983
Eupl08g00766 336 Coils Coil 115 142 - -
Eupl08g00766 336 MobiDBLite consensus disorder prediction 314 336 - -
Eupl08g00766 336 CDD bHLH_AtORG2_like 74 147 - -
Eupl08g00766 336 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 64 217 - -
Eupl08g00766 336 FunFam Transcription factor bHLH126 65 151 - -
Eupl08g00766 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 72 141 IPR036638 GO:0046983
Eupl08g00766 336 Gene3D - 65 143 IPR036638 GO:0046983
Eupl08g00766 336 MobiDBLite consensus disorder prediction 45 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00766 Eupl-Chr8 18519669 18524984 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00766 46 209 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25400 39.306 8.85e-36 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl08g00766 HLH 1.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00766 - - msin:131249051 198.364