Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00763 ATGAACTACCAAAGTCCCAAGAGCATGGCTTTTCTCCCCCGGTCATGGAATCTCAGCTTCTTCCTCATGGGCTGGCTGTGGATGGTGAGCATCAAACCAACCGCTGCGGGGCCGGCTCAGTACCGGCTAAAAGTCCCTCATTTCCAGCCAACTGCATGGGCGCTTGCCCATGCCACCTTCTATGGCGATGAGACTGCAACAGCGACAATGGGAGGGGCTTGTGGGTATGGAAACTTGTTTACTAGTGGTTACGGGACCGATACTGCAGCATTGAGCTCAACATTATTCAACAACGGATACGCTTGTGGAACTTGTTACCAAATACGATGTTTTCAATCTAGTGCTTGCTATGGAGGCTCCCCATTCACGACTGTGACGGCTACAAATCTTTGCCCGCCCAATTGGTCCGAGGATTCCAATGCTGGTGGCTGGTGCAACCCACCTAGAACACACTTTGACATGTCTAAGCCTGCATTCATGAAAATCGCAAATTGGAAAGCTGGCATTGTGCCGGTTATGTATCGCAGAGTGCCATGTATTAAGAGCGGCGGGATCCGATTTTCGTTCCAAGGGAATGGATATTGGTTGTTGGTGTATGTGATGAACGTGGGAGGAGGGGGAGAAATTGCAAGCATTTCGGTGAAGGGAAGTAAAACTGAGTGGATAAGCATGAGCCATAACTGGGGAGCATCATACCAGGCATTTGCAACTCTGGGAGGACAATCTCTTTCCTTCAAGCTCACCTCTTACACTACAAAGGAGACTATCATAGCATGGGATGTCACCCCTTCAGACTGGAACGTCGGATTGACGTACAAGACTTCGGTGAATTTTCACTGA 840 0.494 MNYQSPKSMAFLPRSWNLSFFLMGWLWMVSIKPTAAGPAQYRLKVPHFQPTAWALAHATFYGDETATATMGGACGYGNLFTSGYGTDTAALSSTLFNNGYACGTCYQIRCFQSSACYGGSPFTTVTATNLCPPNWSEDSNAGGWCNPPRTHFDMSKPAFMKIANWKAGIVPVMYRRVPCIKSGGIRFSFQGNGYWLLVYVMNVGGGGEIASISVKGSKTEWISMSHNWGASYQAFATLGGQSLSFKLTSYTTKETIIAWDVTPSDWNVGLTYKTSVNFH* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00763 279 CDD DPBB_EXPA_N 53 179 - -
Eupl08g00763 279 PRINTS Expansin signature 195 216 IPR002963 GO:0009664
Eupl08g00763 279 PRINTS Expansin signature 83 97 IPR002963 GO:0009664
Eupl08g00763 279 PRINTS Expansin signature 123 133 IPR002963 GO:0009664
Eupl08g00763 279 PRINTS Expansin signature 183 195 IPR002963 GO:0009664
Eupl08g00763 279 PRINTS Expansin signature 230 251 IPR002963 GO:0009664
Eupl08g00763 279 PRINTS Expansin signature 142 159 IPR002963 GO:0009664
Eupl08g00763 279 PRINTS Expansin signature 159 172 IPR002963 GO:0009664
Eupl08g00763 279 SUPERFAMILY PHL pollen allergen 181 273 IPR036749 -
Eupl08g00763 279 PRINTS Expansin/Lol pI family signature 221 235 IPR007118 GO:0005576
Eupl08g00763 279 PRINTS Expansin/Lol pI family signature 167 183 IPR007118 GO:0005576
Eupl08g00763 279 PRINTS Expansin/Lol pI family signature 52 67 IPR007118 GO:0005576
Eupl08g00763 279 PRINTS Expansin/Lol pI family signature 92 110 IPR007118 GO:0005576
Eupl08g00763 279 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Eupl08g00763 279 PRINTS Expansin/Lol pI family signature 260 274 IPR007118 GO:0005576
Eupl08g00763 279 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 71 184 IPR007112 -
Eupl08g00763 279 Pfam Lytic transglycolase 88 174 IPR009009 -
Eupl08g00763 279 Gene3D - 184 279 IPR036749 -
Eupl08g00763 279 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 194 274 IPR007117 -
Eupl08g00763 279 SMART dpbb_1 88 174 IPR007112 -
Eupl08g00763 279 SUPERFAMILY Barwin-like endoglucanases 52 202 IPR036908 -
Eupl08g00763 279 PANTHER EXPANSIN-A15 37 274 IPR002963 GO:0009664
Eupl08g00763 279 Gene3D - 41 179 IPR036908 -
Eupl08g00763 279 Pfam Expansin C-terminal domain 185 263 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00763 Eupl-Chr8 18400595 18401797 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00763 47 279 Expansin Gene Family AT1G12560 70.815 2.59e-125 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00763 - - msin:131250136 458.759