Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00757 ATGGTGAGGGGGAAGACACAAATAAAGCGAATAGAGAACGCAACGAGCCGGCAAGTCACCTTCTCAAAGCGTCGAGGCGGGTTACTCAAAAAGGCCTTCGAGCTATCAGTTCTATGCGATGCTGAAGTAGCCCTCATCGTCTTCTCCCCGAGAGGGAAGCTCTATGAGTTCTCAAGCTCCAGCATGCAAAAGACGATAGAACGCTATAAAAAGTATGCGAAAGATGTACAACTCAACAACAAAACAATGGAAAATATGCAGCATTTGAAGTACGAAGCTGCAAGCATGGCAAAGAAGATTGAGATTCTCGAAGTTTCTAATCGGAGGTACTTGGGAGAAGGTTTGGGTTCATGTTCTATAGAAGAACTACAGCAGATGGAGGTCCAGTTGGAGCAAAGCTTAAGCAGCATCCGGGCTAGAAAGACTCAGTTATTTATGGGACAGATTGAGCAACTAAAAGAACAGGAGAGAACTCTAAACGAGGAGAAAGCAATGCTGTGCGAGAAGTGTGGGATGCAACCACAGCAACAATCAACGGAACCAGGAGAAATTGCGCCCTACAGTCAAAGTAGTCAAATTTCTGAGGTGGAGACAGAATTGTTCATTGGAAGGCCTGAAAGAGGAAGTACTCGTCACCTATTGCAAGGTTGA 651 0.4531 MVRGKTQIKRIENATSRQVTFSKRRGGLLKKAFELSVLCDAEVALIVFSPRGKLYEFSSSSMQKTIERYKKYAKDVQLNNKTMENMQHLKYEAASMAKKIEILEVSNRRYLGEGLGSCSIEELQQMEVQLEQSLSSIRARKTQLFMGQIEQLKEQERTLNEEKAMLCEKCGMQPQQQSTEPGEIAPYSQSSQISEVETELFIGRPERGSTRHLLQG* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00757 216 FunFam MADS-box protein SOC1 14 94 - -
Eupl08g00757 216 Coils Coil 149 169 - -
Eupl08g00757 216 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Eupl08g00757 216 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Eupl08g00757 216 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Eupl08g00757 216 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Eupl08g00757 216 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Eupl08g00757 216 Coils Coil 120 140 - -
Eupl08g00757 216 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Eupl08g00757 216 SUPERFAMILY SRF-like 3 87 IPR036879 GO:0003677|GO:0046983
Eupl08g00757 216 CDD MADS_MEF2_like 3 75 IPR033896 GO:0000977|GO:0045944
Eupl08g00757 216 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Eupl08g00757 216 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 172 - -
Eupl08g00757 216 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Eupl08g00757 216 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Eupl08g00757 216 Gene3D - 14 93 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00757 Eupl-Chr8 17680679 17836398 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00757 1 155 MADS-box Gene Family AT2G45660 73.718 3.81e-78 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Eupl08g00757 K-box 1.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00757 - - qsu:112012679 297.745