Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00750 ATGCAAGAACCAGGATTGGGAATGTTGAGTGGTGGTAGTGCTGGAGGAATCGGCGGATATAACGAAAATGTTTCGATGTCGATTTCATTGCCGACTGACCAATTGCGGCTACTGAAGGCGGAGATTGCTACGCACCCTCTTTATGAACAACTACTCGCAACCCACGTCGGCTGTCTTCGTGTTGCTACACCGATCGATCACTTACCGCTTATTGACACCCAGCTCGCACAGTCTCACCATCTTCTTCGATCTTACGCTTCGCAACTTCACCAACCGCAGCAGGTCCTTTCTCCCCACGAGAGACAAGACCTAGACAACTTCTTGGCACAATATCTGTTAGTGTTGTGCTCTTTTAAAGAACAGCTTCAACAACATGTCCGAGTCCATGCCGTTGAAGCTGTCATGGCTTGCCGTGACATCGAACAGTCCTTCCAGGCTCTCACGGGAATAACTCCCAGTGAAGGAACTGGTGCAACAATGTCCGATGATGAGGATGAACTACAGATGGAATGTACTTTGGAAGGAGGCGTAGATGGGCATGACATGATGGGATTTGGTCCACTTCTTCCAACTGAATCTGAGAGGTCACTGATGGAGAGAGTTAGGCAAGAGTTGAAGATTGAACTAAAACAGGGTTTTAGGTCTAAAATCGAAGACGTAAGAGAAGAAATACTTAGAAAGAGAAGGGCAGGCAAATTGCCTGGTGACACAACTTCAGTGTTGAAAAACTGGTGGCAACAACATTCAAAGTGGCCCTATCCAACAGAAGATGACAAGGCAAAACTTGTGGAGGAGACAGGCTTGCAGTTAAAACAAATTAACAATTGGTTCATCAACCAAAGAAAGCGAAACTGGCACAGTAATTCTCAATCAATGACATCTTTAAAGTCCAAACGCAAAAGGTAG 906 0.4581 MQEPGLGMLSGGSAGGIGGYNENVSMSISLPTDQLRLLKAEIATHPLYEQLLATHVGCLRVATPIDHLPLIDTQLAQSHHLLRSYASQLHQPQQVLSPHERQDLDNFLAQYLLVLCSFKEQLQQHVRVHAVEAVMACRDIEQSFQALTGITPSEGTGATMSDDEDELQMECTLEGGVDGHDMMGFGPLLPTESERSLMERVRQELKIELKQGFRSKIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSMTSLKSKRKR* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00750 301 Pfam KNOX1 domain 38 79 IPR005540 GO:0003677|GO:0005634
Eupl08g00750 301 Pfam KNOX2 domain 97 148 IPR005541 GO:0003677|GO:0005634
Eupl08g00750 301 ProSiteProfiles 'Homeobox' domain profile. 224 287 IPR001356 GO:0003677
Eupl08g00750 301 ProSiteProfiles ELK domain profile. 204 224 IPR005539 GO:0003677
Eupl08g00750 301 FunFam homeobox protein knotted-1-like 3 isoform X1 225 286 - -
Eupl08g00750 301 SMART KNOX2_2 94 149 IPR005541 GO:0003677|GO:0005634
Eupl08g00750 301 CDD homeodomain 227 288 IPR001356 GO:0003677
Eupl08g00750 301 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 85 292 - -
Eupl08g00750 301 Pfam Homeobox KN domain 244 283 IPR008422 GO:0003677|GO:0006355
Eupl08g00750 301 SMART HOX_1 226 291 IPR001356 GO:0003677
Eupl08g00750 301 SMART KNOX1_2 36 80 IPR005540 GO:0003677|GO:0005634
Eupl08g00750 301 Gene3D - 223 298 - -
Eupl08g00750 301 SUPERFAMILY Homeodomain-like 226 293 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00750 Eupl-Chr8 16836637 16872104 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00750 1 300 Homeobox Transcription Factor Family AT1G62990 73.026 2.67e-160 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Eupl08g00750 KNOX2 9e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00750 - - nnu:104596214 503.442