Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00739 ATGACGACCAGAGCTACTTTGGGAAATTACGATACAAAGAAAATGAGACGAGCACCTAAGGTTGTTGCAGAGGAGGGTGATTTCTCATTGCAAGTTGAGTTGATTCGAGATCAGCTGAACAGGAGAAATTCATTTGGACAAGAAGTGAAGCAACATGAGGAGGAATCACTTCTTAGTCAGAAAAGGTTTGATGAGTGCAGTATTTCTCCATTGACAGTCAAAGCACTTACGTCAGCTGGGTATTTGCAAATGACCAAAGTACAGGAGGCCACTCTTTCTGTTTGTCTTGATGGCAAGGATGCTTTAGTTAAAGCTAAAACCGGCACGGGCAAAAGTGCAGCTTTTTTGCTTCCTGCAATTGAAGCAGTTCTGAAGGCTACAAGTAGCAGTGTAAATCAACGTGTGCTGCCGATACTTGTTCTCATTCTTTGCCCCACAAGGCAGCTTGCTAGTCAAATTGCCGCAGAAGCAAATGTCATGTTAAAGTACCATGATGGTATAGGTGTTCAAACACTAATTGGGGGTACACGGTTCAAGGTTGATCAGAAACGCCTAGAATCAGATCCTTGTCAGATTATAGTTGCAACCCCTGGTAGGTTGCTGGACCATATCGAGAACAAATCTGGCTTCTCCATGCGTTTAATGGGCCTGAAAATGCTTATACTTGATGAAGCTGACCACTTACTAGACTTGGGATTCCGGAAGGATATAGAGAAAATTGTTGATTGTGTGCCACGTCAAAGGCAGTCCTTGCTGTTTTCCGCTACAATTCCCAAAGAGGTTCGCCGGATTTCACAACTTGTTTTGAAAAGGGAACATGTATTTATTGATACAGTGGGTCTAGGTGGTGTAGAAACTCATGCCAAGGTTAAGCAGTCATATCTTGTTGCACCACACGAACTGCATTTTCTAATAGTTCATCAGCTTTTGAAGCAGCATATCTCACAAGTGCTTGATTACAAGGTTATTATTTTCTGTACAACTGCGATGGTGACATCACTTATCTTCCTACTTCTCCGGGAGATGAAATTGAATGCCAGGGAAATGCATTCTAGAAAACCTCAACTTTATCGCACTCGTATATCTGACGAGTTTCGAGAATCCAAGCGATTGATTCTTGTTACATCTGATGTTTCAGCTCGGGGAATGAATTATCCTGATGTTACTCTGGTGATTCAGGTAGGTATTCCTTCTGACAGAGAGCAATACATACATCGTCTTGGAAGGACAGGGCGTGAAGGCAAAGAAGGAGAAGGCATACTATTGCTTGCACCATGGGAAGAATATTTCTTAGATGAAATAAAAGATCTTCCAATTGATAAGTCCCCTTTACCACGATTAGATTCAGATATAAAACTGAAGGTGGAGGATGCATTAATGAAGATTGATGCTAGTATCAAGGAAGCTGCATATCATGCATGGCTCGGTTACTATAATTCTATCAGGGAGATAGGAAGAGATAAAACCACACTAGTAGAATTGGCCAACCGATTTTGTGATTCAATTGGCTTGCAAAAGCCTCCCGCTCTTTTCAGGAAAACAGCTTCCAAGATGGGTTTGAGAGACATCCCTGGCATCCGAATAAGAAAGTAG 1593 0.42 MTTRATLGNYDTKKMRRAPKVVAEEGDFSLQVELIRDQLNRRNSFGQEVKQHEEESLLSQKRFDECSISPLTVKALTSAGYLQMTKVQEATLSVCLDGKDALVKAKTGTGKSAAFLLPAIEAVLKATSSSVNQRVLPILVLILCPTRQLASQIAAEANVMLKYHDGIGVQTLIGGTRFKVDQKRLESDPCQIIVATPGRLLDHIENKSGFSMRLMGLKMLILDEADHLLDLGFRKDIEKIVDCVPRQRQSLLFSATIPKEVRRISQLVLKREHVFIDTVGLGGVETHAKVKQSYLVAPHELHFLIVHQLLKQHISQVLDYKVIIFCTTAMVTSLIFLLLREMKLNAREMHSRKPQLYRTRISDEFRESKRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREGKEGEGILLLAPWEEYFLDEIKDLPIDKSPLPRLDSDIKLKVEDALMKIDASIKEAAYHAWLGYYNSIREIGRDKTTLVELANRFCDSIGLQKPPALFRKTASKMGLRDIPGIRIRK* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00739 530 Gene3D - 284 508 IPR027417 -
Eupl08g00739 530 PANTHER RNA HELICASE 48 452 - -
Eupl08g00739 530 Gene3D - 39 277 IPR027417 -
Eupl08g00739 530 SMART ultradead3 80 293 IPR014001 -
Eupl08g00739 530 Pfam Helicase conserved C-terminal domain 310 413 IPR001650 -
Eupl08g00739 530 Pfam DEAD/DEAH box helicase 85 263 IPR011545 GO:0003676|GO:0005524
Eupl08g00739 530 SMART helicmild6 333 414 IPR001650 -
Eupl08g00739 530 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 309 459 IPR001650 -
Eupl08g00739 530 FunFam Putative LRR receptor-like serine/threonine-protein kinase 116 211 - -
Eupl08g00739 530 Coils Coil 35 55 - -
Eupl08g00739 530 CDD SF2_C_DEAD 290 423 - -
Eupl08g00739 530 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 92 275 IPR014001 -
Eupl08g00739 530 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 61 89 IPR014014 GO:0003724
Eupl08g00739 530 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 139 431 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00739 Eupl-Chr8 16067403 16083115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00739 63 444 Eukaryotic Initiation Factors Gene Family AT3G19760 29.500 2.01e-45 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00739 - - nnu:104596130 892.108