Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00718 ATGGCTCCGCCGGTTGAACAGATCGGCGAATCAACGGCTGGAGATGCGCAAAGATCTCTACCGACGCCGTTTCTGACGAAAACGTATCAGCTTGTTGAGGATCCTTCGATAAACGACGTTATCTCATGGAACGAAGACGGTTCCACCTTCATCGTCTGGCGACCGGCCGAGTTTGCTAGAGATCTACTTCCAAAGTATTTCAAGCATAACAACTTCTCCAGCTTCGTTCGGCAACTAAACACCTACGGATTCCGAAAAATTGTACCGGATAGATGGGAATTCGCGAACGATTGCTTTCGCAGAGGCGAGAAAAAGCTCCTTTGTGACATTCAGCGTCGGAAAATATCTCCTGGAACCGCTGCAGCTTCTGTGACGATCGCTGCGATTCCTGCGACTCGAACAGGATCTCCGACGAACTCTGGGGACGAGCAGGTGCTCTCCTCGAACTCATCGCCGGCTATGGTTCCTGCTACTAGTTGTAGCAGCAGGGCCGAACTCATCGACGAGAATGAGAGACTAAGAAAGGAGAACCAGCATTTGAGCCACGAACTGACGCAGATGAAGAACCTCTGCAACAATATCTTCGTTTTGATGACTAACTACGCCAGCACTCAACAAGAAAGCGGCAGTTGTAGTTTTCCGATCGAGAAACCGCTCGATCTAATACCAGCAAAGCGGTTTTCCGACGAGTCTGACGCTGCCGCCGGTGTGGGTCAGAGTCGAATGAAGACAGAAGAAGAGACGAGCCCACGATTATTCGGTGTCCACATCGGGCTGAAGCGTGTGAGAAGAGAAGGTAATGAAGAAGATCAAGAGCAGCAACAGCCTGGACCAGAGGTGAAACCGGAACAGTTGGATCCAAACGCTGATCATCAAGACCCTCCTTGGATTAAATACACGAGTCGATCCAGCCAAAGGGTCTGTAATCAAGCTTGTAGAGAATCATAG 948 0.5011 MAPPVEQIGESTAGDAQRSLPTPFLTKTYQLVEDPSINDVISWNEDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANDCFRRGEKKLLCDIQRRKISPGTAAASVTIAAIPATRTGSPTNSGDEQVLSSNSSPAMVPATSCSSRAELIDENERLRKENQHLSHELTQMKNLCNNIFVLMTNYASTQQESGSCSFPIEKPLDLIPAKRFSDESDAAAGVGQSRMKTEEETSPRLFGVHIGLKRVRREGNEEDQEQQQPGPEVKPEQLDPNADHQDPPWIKYTSRSSQRVCNQACRES* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00718 315 Gene3D - 16 114 IPR036388 -
Eupl08g00718 315 MobiDBLite consensus disorder prediction 1 20 - -
Eupl08g00718 315 SUPERFAMILY "Winged helix" DNA-binding domain 21 113 IPR036390 -
Eupl08g00718 315 MobiDBLite consensus disorder prediction 260 315 - -
Eupl08g00718 315 SMART hsfneu3 20 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Eupl08g00718 315 PRINTS Heat shock factor (HSF) domain signature 24 47 IPR000232 GO:0003700|GO:0006355|GO:0043565
Eupl08g00718 315 PRINTS Heat shock factor (HSF) domain signature 75 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Eupl08g00718 315 PRINTS Heat shock factor (HSF) domain signature 62 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Eupl08g00718 315 Coils Coil 163 190 - -
Eupl08g00718 315 MobiDBLite consensus disorder prediction 260 276 - -
Eupl08g00718 315 MobiDBLite consensus disorder prediction 232 251 - -
Eupl08g00718 315 MobiDBLite consensus disorder prediction 132 158 - -
Eupl08g00718 315 MobiDBLite consensus disorder prediction 132 159 - -
Eupl08g00718 315 ProSitePatterns HSF-type DNA-binding domain signature. 63 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Eupl08g00718 315 FunFam Heat stress transcription factor B-4 16 114 - -
Eupl08g00718 315 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 16 264 IPR027725 -
Eupl08g00718 315 MobiDBLite consensus disorder prediction 297 315 - -
Eupl08g00718 315 Pfam HSF-type DNA-binding 24 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00718 Eupl-Chr8 15353847 15372465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00718 2 309 HSF AT5G62020 49.074 2.37e-95 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Eupl08g00718 HSF_DNA-bind 3e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00718 K09419 - nnu:104612735 437.958