Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00711 ATGGAGACGACTAGGTCTTCGAATTCACCCGCCGATGATATTGTAGATTCGACCCCATTGCTCGGGGCTTCGATCGGAAACCGAGATGATGATCGGAGTCGTAGATTGGGTCGCAGGCCGAGCTTACGTGGAGCTGCGCGGTTTCTTAGGAGAGCTAGCAGCCGTCGGATGATGAGGGAGCCTTCGATGCTGGTGAGAGAAACGGCAGCGGAGCAATTGGAAGAACGACAGAGCGATTGGGCATATTCAAGGCCGGTTGTTGTTCTGGACATCATTTGGAACTTGGCGTTTGTGATTGTTGCGATTGTGGTTCTGATTTTGAGCAGGAACGAATCGCCTTCGATGCCATTGAGGTTGTGGATCGTTGGGTACGCTCTGCAATGTGTCCTCCATATGGTCTGCGTGTGCGTTGAGTATAGGCGGCGCCACCCGCCACAGCGGTCAGAGAATATCAGAAATGGGAGCACCGGTAATTTGAGTTTGAATGCTCGGGAGGAGGCTGGGGACTCTGATGCATATGCACCCGAGCCACATCAGGATGAGGACAGAACCAGTGTTGCAAAGCATTTGGAATCTGCAAATACAATGTTTTCATTCATATGGTGGATCATTGGATTCTATTGGGTATCTGCTGGTGGCCAAACATTGACTCGCGATTCACCTCAGCTTTACTGGCTTTGTATAGTTTTTCTGGCGTTTGATGTTTTCTTTGTTGTTTTTTGTGTGGCCTTGGCATGTGTAATTGGTATTGCTGTTTGCTGCTGTCTTCCATGCATTATTGCAATCTTATATGCTGTAGCAGATCAGGAAGGAGCATCAAAGGAGGACATTGATCAGCTACCAAAATTCAAATTCCGGAAGATAGGTGAATTTGAGAAACTTAATGGGGAGATACAGGGACCTTTTGGAGGAATAATGACTGCATGCGACACTGATACACCCATCGAACATGTTCTTTCACTAGAGGATGCTGAGTGCTGCATCTGCCTTACCACCTACGACGATGGAGTTGAGCTGCGTGAGCTTCCTTGCGGTCATCATTTTCACTGTGCCTGCATAGACAAGTGGTTGTACATTAATGCTACATGTCCACTCTGCAAGTATAACATCGTAAAGAGTGGCAGCCACGGAAGGGATGAAGTGTAG 1146 0.4808 METTRSSNSPADDIVDSTPLLGASIGNRDDDRSRRLGRRPSLRGAARFLRRASSRRMMREPSMLVRETAAEQLEERQSDWAYSRPVVVLDIIWNLAFVIVAIVVLILSRNESPSMPLRLWIVGYALQCVLHMVCVCVEYRRRHPPQRSENIRNGSTGNLSLNAREEAGDSDAYAPEPHQDEDRTSVAKHLESANTMFSFIWWIIGFYWVSAGGQTLTRDSPQLYWLCIVFLAFDVFFVVFCVALACVIGIAVCCCLPCIIAILYAVADQEGASKEDIDQLPKFKFRKIGEFEKLNGEIQGPFGGIMTACDTDTPIEHVLSLEDAECCICLTTYDDGVELRELPCGHHFHCACIDKWLYINATCPLCKYNIVKSGSHGRDEV* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00711 381 PANTHER TARGET OF ERK KINASE MPK-1 52 372 - -
Eupl08g00711 381 SMART ring_2 326 366 IPR001841 -
Eupl08g00711 381 Pfam Ring finger domain 325 367 IPR001841 -
Eupl08g00711 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 311 374 IPR013083 -
Eupl08g00711 381 MobiDBLite consensus disorder prediction 1 36 - -
Eupl08g00711 381 FunFam E3 ubiquitin-protein ligase At1g12760 312 377 - -
Eupl08g00711 381 ProSiteProfiles Zinc finger RING-type profile. 326 367 IPR001841 -
Eupl08g00711 381 SUPERFAMILY RING/U-box 316 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00711 Eupl-Chr8 15110649 15122469 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00711 17 376 C3H Transcription Factor Family AT1G68070 49.587 4.22e-120 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00711 - - tss:122638698 594.349