Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00692 ATGGCGGAAGTGGAAACATCCAGCTCTAGTCTTCTCGAGATAGATGAATTTTACTTGTCAGTTCTCTTTGATGAAGAGAAGATCTTCCCAATCTCGGATGAGAAGTATGCAGAAGAGTTACAGCTTCAAGAAGCTCTAATGTCTTCCGTGATTGCTTCTCAGATGGCAGTTGGGCCATCAAAAATCAAAGAAAACCCGACTGAAGAGCTGAAACAAGTTAAGAAAGAAGCTGGTGAATCTTCTAAAAGCTACTGTGAGATTTGCATGGAAGGGAAACCAAAGGAAGAGATGATGATCAGAAACAACAAGTGTCCTCACTCCTTTTGTTCCGACTGTGTAAGCAAACATGTCGCGTCGAAGATCCAAGATAACATCAGTATGGTTACGTGTCCAGGATTGAACTGTGAGGTGGTGTTAGAACCCCACATATGCCGATCGATTATCACTGATCAAGTGTTTGATCAGTGGGAGAACGCTCTATGTGAGTCTTTAATTCTTGAAACAGAGAAATTTTACTGCCCTTTCGACGACTGTTCAGCGATGTTGGTGGCTGATGGAGTGGAGGTCGTAAGGGAGTCGGAGTGCCCGAATTGCCATAGATTGTTCTGCGCGCAGTGTAAGGTCCCATGGCATTCGGAGATGGGATGTGAGGATTTTCAGAGATTGAATGAGGATGAGAGAGGGAGAGAAGATCTGATGGTGGTGGCGCTTGCTAAGCAGCAAAAATGGATGAGATGTCCGAATTGCTACTTCTTTGTCGAAAAGACAGATGGTTGTTTACATATTACTTGCAGTTGCAAATTTCAATTTTGCTATGGGTGTGGATCGACGTGGACTCAAACTCATGGTGGTTGCCAAGGAGCATAG 867 0.4418 MAEVETSSSSLLEIDEFYLSVLFDEEKIFPISDEKYAEELQLQEALMSSVIASQMAVGPSKIKENPTEELKQVKKEAGESSKSYCEICMEGKPKEEMMIRNNKCPHSFCSDCVSKHVASKIQDNISMVTCPGLNCEVVLEPHICRSIITDQVFDQWENALCESLILETEKFYCPFDDCSAMLVADGVEVVRESECPNCHRLFCAQCKVPWHSEMGCEDFQRLNEDERGREDLMVVALAKQQKWMRCPNCYFFVEKTDGCLHITCSCKFQFCYGCGSTWTQTHGGCQGA* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00692 288 FunFam RBR-type E3 ubiquitin transferase 218 288 - -
Eupl08g00692 288 SUPERFAMILY RING/U-box 80 163 - -
Eupl08g00692 288 ProSitePatterns Zinc finger RING-type signature. 104 113 IPR017907 -
Eupl08g00692 288 SUPERFAMILY RING/U-box 161 221 - -
Eupl08g00692 288 CDD Rcat_RBR_unk 242 278 - -
Eupl08g00692 288 CDD BRcat_RBR_unk 167 219 - -
Eupl08g00692 288 SMART ibrneu5 226 285 IPR002867 GO:0008270
Eupl08g00692 288 SMART ibrneu5 154 216 IPR002867 GO:0008270
Eupl08g00692 288 ProSiteProfiles Zinc finger RING-type profile. 85 131 IPR001841 -
Eupl08g00692 288 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 54 278 IPR031127 GO:0004842|GO:0016567
Eupl08g00692 288 FunFam RBR-type E3 ubiquitin transferase 80 167 - -
Eupl08g00692 288 Pfam IBR domain, a half RING-finger domain 237 285 IPR002867 GO:0008270
Eupl08g00692 288 Pfam IBR domain, a half RING-finger domain 156 216 IPR002867 GO:0008270
Eupl08g00692 288 SUPERFAMILY RING/U-box 227 285 - -
Eupl08g00692 288 ProSiteProfiles TRIAD supradomain profile. 81 288 IPR044066 -
Eupl08g00692 288 Gene3D - 214 287 - -
Eupl08g00692 288 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 167 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00692 Eupl-Chr8 14179825 14180917 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00692 78 276 C3H Transcription Factor Family AT2G19610 27.619 7.51e-18 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00692 K11975 - nnu:104609385 390.193