Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00689 ATGGCCATGCAGATGAATGTCCATTATGTAAATGCTGGCATCCCTGGCATAGTCGAAGAGAATTTCGAAGGATTTGACCTCGGACGCGATGATCTTTCTCTCCAAGAGTTTATCCAATATCAGGAAACTGTGTACCAGTCACTCCAAGCAACTGGTGGTAGTGACAGGGCTAAAGCTTCTGTGAGTACTGATTCTAATCATGAACAAAGTGGTGGCAAGAGACAGGTCTCGGAAAATGAGGAAGAAACTTCACAGGTTAGCAATGTTGAATCACAGTTAGCATTGGATGAAGCTTTAGCTAGAACCTTGCAGCTGGAGTCGGAGAACCAGTATGGTATTGCCTCCCTCAAAGAAACTACAGGAAGTGAAGTGGTTAACAGAGAAGTCAACTCTACGAACACATCTCGCCAGGTTGTGAGACAGGATGACATTGACCCGGATGACATGACCTATGAGCTGTTGTTTGGTATGCACCAATTGATTAGGACATTTTTATTGTGTCAGCAACTGCGATCACTAGAAGAATCCATTGGCAATGAAAGTAGAGGGTTGTCTGAGGAGGTTATTTCTTACTTGGAATCATCCAAGTACAAATCAGGGACAGGGTTCCTCTCAAAGAAAGACAAACATGAGGAGTGCGTGATCTGTCGTTCTGAATACAAAAACAGAGAGAAGTTGATCACTTTGCCATGCCATCACCGATATCATTCAGAATGTGTGACACAGTGGTTGAAGATCAATAAGACATGCCCAGTGTGCTGTGAGGAGGTATTTGGGTCCTGA 783 0.4393 MAMQMNVHYVNAGIPGIVEENFEGFDLGRDDLSLQEFIQYQETVYQSLQATGGSDRAKASVSTDSNHEQSGGKRQVSENEEETSQVSNVESQLALDEALARTLQLESENQYGIASLKETTGSEVVNREVNSTNTSRQVVRQDDIDPDDMTYELLFGMHQLIRTFLLCQQLRSLEESIGNESRGLSEEVISYLESSKYKSGTGFLSKKDKHEECVICRSEYKNREKLITLPCHHRYHSECVTQWLKINKTCPVCCEEVFGS* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00689 260 SMART ring_2 213 253 IPR001841 -
Eupl08g00689 260 Pfam Ring finger domain 212 253 IPR001841 -
Eupl08g00689 260 ProSiteProfiles Zinc finger RING-type profile. 213 253 IPR001841 -
Eupl08g00689 260 FunFam E3 ubiquitin ligase BIG BROTHER 174 258 - -
Eupl08g00689 260 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 171 258 IPR013083 -
Eupl08g00689 260 MobiDBLite consensus disorder prediction 51 70 - -
Eupl08g00689 260 MobiDBLite consensus disorder prediction 51 91 - -
Eupl08g00689 260 SUPERFAMILY RING/U-box 212 257 - -
Eupl08g00689 260 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 3 259 IPR033276 GO:0004842|GO:0016567|GO:0046621
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00689 Eupl-Chr8 14099540 14109052 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00689 6 259 C3H Transcription Factor Family AT3G63530 33.712 3.17e-36 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00689 K19045 - psom:113306532 283.878