Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00670 ATGGCGGGATCTGAGACCACCAAGACTAACACCACCACCACCACCACCACCACAACAACAACAACAACGACTCAAGCGAACAAGGCAACGGTTCGTAGATTCATTGGAGTCCGCCAGAGACCTTCAGGAAGATGGGTTGCAGAGATCAAGGACTCCTCTCAACATGTGAGACTCTGGCTCGGAACTTTCGACTCCCCCGAAGAAGCCGCTCGAGCATATGATGAAGCGGCTCGAGCCCTACGCGGGAAAAATGCTCGAACCAACTTTGCACCGATGAACCCTAATTCAACCCCATCAGATTCATCTCCTTCCAACGACAGTTTATCACCAGAATCTGAGGGACGTAATGGTCTTAATTTCTCTTCCTTGAAAGCCAAGTTTAGCAAGAACCTCCAGAGTATCATGGCTAGGACAACAGGAAACAAGTCATCCAAGACTAGAAGTATCGAGAAGGCAGTGCAACCTAGCATCATTGTTCCCCATGTAGCAGATCCATCTTCTTGGGATAGTTCAAGTTTGTCGGATTGTAGCAACTCGGGATCATGGGACTGTATCGGATTCCTACCACATGTAGCTGATTCAGATGGATCAGATATAGGGGAAGGGTATCTTAGTGAGCAAGGCTTTGTGGATCCAATGATGGGGAGGATTGGTAGCCCAGAGCTACCGGTGAAAGGAGTAGTAGATCAACAGCTTGGAGGCAGTCTTGGTGTACGGCTAGCAAGATATTGTGAGAAGATGGAGGTCGACTTGAATGATGGTGATGGTGGACAGCAAGGTTGTGGTGCTCAAGGGAGGAGCATGTGGAGGAAAATGGTCCTTGCACGCGATCCACTTGTAGGTACGGTGAGGAAGAGCCGGAGAGGAGCACATCCAAGAAGAGAAGCCCAAGATGTCTTGTTGGCTGATGGAGAGCCTGAAAGGGTGCACTTGATGTCCGTAAAGGAGTGGGGGCAGCAAAATTGGTGTAGCAGCTACCGATGGAAGGAGTAG 993 0.4975 MAGSETTKTNTTTTTTTTTTTTTTQANKATVRRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTFDSPEEAARAYDEAARALRGKNARTNFAPMNPNSTPSDSSPSNDSLSPESEGRNGLNFSSLKAKFSKNLQSIMARTTGNKSSKTRSIEKAVQPSIIVPHVADPSSWDSSSLSDCSNSGSWDCIGFLPHVADSDGSDIGEGYLSEQGFVDPMMGRIGSPELPVKGVVDQQLGGSLGVRLARYCEKMEVDLNDGDGGQQGCGAQGRSMWRKMVLARDPLVGTVRKSRRGAHPRREAQDVLLADGEPERVHLMSVKEWGQQNWCSSYRWKE* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00670 330 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Eupl08g00670 330 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700|GO:0006355
Eupl08g00670 330 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
Eupl08g00670 330 CDD AP2 33 90 IPR001471 GO:0003700|GO:0006355
Eupl08g00670 330 MobiDBLite consensus disorder prediction 88 116 - -
Eupl08g00670 330 MobiDBLite consensus disorder prediction 1 27 - -
Eupl08g00670 330 SUPERFAMILY DNA-binding domain 34 90 IPR016177 GO:0003677
Eupl08g00670 330 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 19 148 - -
Eupl08g00670 330 Gene3D AP2/ERF domain 32 91 IPR036955 GO:0003700|GO:0006355
Eupl08g00670 330 FunFam ethylene-responsive transcription factor RAP2-11 32 91 - -
Eupl08g00670 330 Pfam AP2 domain 33 82 IPR001471 GO:0003700|GO:0006355
Eupl08g00670 330 MobiDBLite consensus disorder prediction 83 116 - -
Eupl08g00670 330 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00670 Eupl-Chr8 13700255 13705848 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00670 17 97 AP2-EREBP Transcription Factor Family AT5G19790 60.494 1.45e-27 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Eupl08g00670 AP2 8.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00670 K09286 - vvi:104881869 240.35