Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00663 ATGGCGGTTGGAACAAAAATAGCGGCTGTTATAATAGATTCGGACCTCCCCCGTTACATTATAACCCCCCGTGGGGTTCCACCGTTCCAGACTGGCATCTCACAAGATTCCGTGTGCGCGTCGAAAACGCAAACACGCGTGCGACCAAATAAAACACCCCCCCTCTCACATTCCTTTGGCGGCAACAAGTCTGCCTTCAAATACCCAATCAGGATAACTATCTCCCCCAATCCCAACTCCCCAACAAGACCTGAAAACAACACAAACACTTCCAAGCTTCCCATGGAGATCTTCAGTAATCAGTACTCTGAGTCTGACCCACATACATATAGGTCAGATTCCCGGTCATTTGATATGCCGGAAACATCCCCCACGTCGGATGCAAGTACTCATCGAGCTTCCTTCTCCGATGAAGAAGTATTACTAGCGTCAAGTCATCCCAAACGCCGTGCAGGACGGAAGAAGTTCCGGGAAACACGTCACCCAATCTATAGAGGTGTTAGACAGAGAAACGGTGATAAGTGGGTGTGCGAGGTGCGGGAACCAAACAAGAAGACACGTATATGGCTCGGAACATTCCCAACTGCGGAGATGGCTGCAAGAGCTCATGATGTCGCTGCATTGGCACTAAGAGGACGATCTGCTTGTCTTAATTTTGCTGACTCGGCATGGCGATTGCCCGTGCCGGTGTCCGCGGATTCTAAGGACATACAGAAAGCAGCAGCAGATGCAGCAGAAGCATTCCGACCATTGGAATTCACTAATGGAGTTTCTAGTTCTAACTGTTCGACTGATCATGAAGTAAAGGCGAAGGATACGACGGCAGCCGTATCAGTGGAGAAAGCGTTTTACATGGATGAAGACGCGATCTTCGGCATGCCGGATTTGCTTACAAACATGGCTGAAGGGTTGTTACTCTCTCCACCACCGTGTGCGGTAAGTGGATTCAATTGGGATGACGTGGAAAGTGATCTTGACGTGTCTTTATGGAATTACTCTATTTAG 1005 0.4896 MAVGTKIAAVIIDSDLPRYIITPRGVPPFQTGISQDSVCASKTQTRVRPNKTPPLSHSFGGNKSAFKYPIRITISPNPNSPTRPENNTNTSKLPMEIFSNQYSESDPHTYRSDSRSFDMPETSPTSDASTHRASFSDEEVLLASSHPKRRAGRKKFRETRHPIYRGVRQRNGDKWVCEVREPNKKTRIWLGTFPTAEMAARAHDVAALALRGRSACLNFADSAWRLPVPVSADSKDIQKAAADAAEAFRPLEFTNGVSSSNCSTDHEVKAKDTTAAVSVEKAFYMDEDAIFGMPDLLTNMAEGLLLSPPPCAVSGFNWDDVESDLDVSLWNYSI* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00663 334 CDD AP2 162 222 IPR001471 GO:0003700|GO:0006355
Eupl08g00663 334 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 116 332 IPR045277 GO:0003700
Eupl08g00663 334 MobiDBLite consensus disorder prediction 116 131 - -
Eupl08g00663 334 FunFam Ethylene-responsive transcription factor 2 162 221 - -
Eupl08g00663 334 Pfam AP2 domain 162 212 IPR001471 GO:0003700|GO:0006355
Eupl08g00663 334 MobiDBLite consensus disorder prediction 44 59 - -
Eupl08g00663 334 PRINTS Ethylene responsive element binding protein signature 186 202 IPR001471 GO:0003700|GO:0006355
Eupl08g00663 334 PRINTS Ethylene responsive element binding protein signature 164 175 IPR001471 GO:0003700|GO:0006355
Eupl08g00663 334 ProSiteProfiles AP2/ERF domain profile. 163 220 IPR001471 GO:0003700|GO:0006355
Eupl08g00663 334 SUPERFAMILY DNA-binding domain 163 222 IPR016177 GO:0003677
Eupl08g00663 334 SMART rav1_2 163 226 IPR001471 GO:0003700|GO:0006355
Eupl08g00663 334 MobiDBLite consensus disorder prediction 73 107 - -
Eupl08g00663 334 MobiDBLite consensus disorder prediction 44 63 - -
Eupl08g00663 334 MobiDBLite consensus disorder prediction 72 155 - -
Eupl08g00663 334 Gene3D AP2/ERF domain 163 221 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00663 Eupl-Chr8 13538630 13540487 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00663 129 332 AP2-EREBP Transcription Factor Family AT5G51990 58.140 7.38e-78 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Eupl08g00663 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00663 - - nnu:104612692 299.671