Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00661 ATGCAAGGAGAACAATTGCCACAACCCTCCTCAATCCGCACGTGTGAAGACCCGTCACCCAAACGACAAGAACCACCAAAAACTCCCATGACTTCAGCCTCAGCTAGTGGATCAACCAACCAAAGGACTGCCGGAAAACACCCAGTTTATCGAGGAATCCGTTGTCGGAGCGGCAAATGGGTGTCGGAGATACGGGAGCCGCGTAAGACTACACGTATATGGCTAGGCACGTTCCAAACACCGGAAATGGCGGCTGCCGCCTACGATGTGGCTGCGCTTTCTCTAAAAGGCATGGACGCCATGCTCAACTTCCCGGATTCCATTCGGTCCTACCCAATTCCAGCGTCTGCATCACCATCTCATATCCGTGCAGCAGCAACTGCGGCTGCAACGTCGAGACTACCGAAGCCGAAAACTAGTGATAACCCAGTACTCAGTCGAGAAGAAAATAATGATTCGTCCACTACACAAGAAGAGTTCATTGATGAGGAGGCACTGTTTGACATGCCAAAGCTACTGGTGAACATGGCGGAGGGAATGCTGGTGAGCCCACCAAGGATAAATTCTCCACCGTCTGATGACTCACCAAGGAATTCGGATGGAGAAAGCCTATGGAGCTACTTTTAA 627 0.512 MQGEQLPQPSSIRTCEDPSPKRQEPPKTPMTSASASGSTNQRTAGKHPVYRGIRCRSGKWVSEIREPRKTTRIWLGTFQTPEMAAAAYDVAALSLKGMDAMLNFPDSIRSYPIPASASPSHIRAAATAAATSRLPKPKTSDNPVLSREENNDSSTTQEEFIDEEALFDMPKLLVNMAEGMLVSPPRINSPPSDDSPRNSDGESLWSYF* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00661 208 SMART rav1_2 49 111 IPR001471 GO:0003700|GO:0006355
Eupl08g00661 208 MobiDBLite consensus disorder prediction 133 151 - -
Eupl08g00661 208 MobiDBLite consensus disorder prediction 182 208 - -
Eupl08g00661 208 MobiDBLite consensus disorder prediction 128 161 - -
Eupl08g00661 208 MobiDBLite consensus disorder prediction 26 45 - -
Eupl08g00661 208 MobiDBLite consensus disorder prediction 1 51 - -
Eupl08g00661 208 MobiDBLite consensus disorder prediction 192 208 - -
Eupl08g00661 208 Gene3D AP2/ERF domain 49 106 IPR036955 GO:0003700|GO:0006355
Eupl08g00661 208 MobiDBLite consensus disorder prediction 1 16 - -
Eupl08g00661 208 FunFam Ethylene-responsive transcription factor 2 48 106 - -
Eupl08g00661 208 ProSiteProfiles AP2/ERF domain profile. 49 105 IPR001471 GO:0003700|GO:0006355
Eupl08g00661 208 Pfam AP2 domain 48 97 IPR001471 GO:0003700|GO:0006355
Eupl08g00661 208 SUPERFAMILY DNA-binding domain 49 107 IPR016177 GO:0003677
Eupl08g00661 208 CDD AP2 50 107 IPR001471 GO:0003700|GO:0006355
Eupl08g00661 208 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 33 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00661 Eupl-Chr8 13490822 13491782 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00661 44 207 AP2-EREBP Transcription Factor Family AT5G52020 56.322 4.73e-51 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Eupl08g00661 AP2 2.1e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00661 - - nnu:104596183 244.973