Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00660 ATGGATGGTGAGGTAATTCCAGAAGTTGAACCAAGCAGTACTAAAACATTTCCTACTGGTCTTTGTGTTTTAGTTGTGGATGACAATCCAACATGTCTTAAGATCCTCGAAACAATGCTTAAAACATGCAAATATGAAGTTGTGGCTGTTGGACAAGCAATCGATGCGTTGTCATTGCTCCGAGAAAGGCAAGGTGGATTCGACTTAGTTTTAACAGATGTCCACATGCCATATATGGATGGGTTTGAGCTTCTCAAACTCATTGGGAAGGAATTTGAGATTCCTGTCATTATGATGTCTGCTGATGACAAAGTGAAGGTTGTGACGAAAGGATTAGAAAGTGGGGCTTCTTTTTACCTCTTGAAGCCCATAACTATAAATGATGTTCAAAACCTATGGCAGTATGTGATTCGAAAGAAAATAGATGACATGGTAGAAATGGAGAAAAAAGTAAGTGTTCAAGTTGCTTCACCACTTGATAAGACATTGGAAGAGGATACTGAATGTGCATCCTCAGTAAACGAAGATAAAAATGATTATAAGAGAAAAACAGCCAATGAGAAGGATAAAGATGAAGAAGAAGATAAAAACGATTCAACGACACATAAGAAAGCAAGGGTGGTTTGGAACACCGAGCTTCATAATCAATTCTTGGACGCTATTGATCAATTAGGCATTGATAAAGCTGTTCCAAAAAAAATTCTTGAGATGATGAATGTCCCAGGATTAACTAGAGAAAATGTTGCCAGCCATTTGCAGAAATATCGAATCTTCACAAAACGAATTATGGAAGAAAGCCAATCTCTTGAACCTAGTGTCGCAAGGTCCTTGACCAATGGCGCTCTTAATTCAATCTTTGCATCGGATCATCCTTCATTGATGTGCAACTTACAAGAAGGCTATCCCCAGTTCCCTAAAGAACAACGCACATTGACATCATTCCAACCAGGATTTGGAGGTAGTATTCAAGGTCATAATGCTCCTATTCGAATGCCTTCCATCGGTCATGGACATTTTCTTAATCAGGAACAATCAGCTAGCAACTCTATAGCTCAAGTAAGACATGGACAATCACTTCTGATGCACAATCAAGGAAACTCGTATCAACCATTGCTTGGCACTGCATCATCTTTTAATCAACAAAACAATGTCAACTATATGGCTCTTGGAATGGAACCACATAACATTAGAATGGGCTCATCATTACATGGTGATATATCAACTGACCTTGTGAGAGGTGGCGGGACAATGCAGATGGCACATCAACAACATCAGGCAAGATCGGGACTTTTTGACAATAGCCTACTTGATCAGAACTTTAGCACTTTGAGCCTTCAAGGCCAAAACAATATTCAAAATGTAGGAAACATGGCACCATATTGCAATTCTACCAATAACAATCATATTGGAATTCAGATGATTAGTACTGGAGGGTTTGCTGGATTGAGTAATCAAATGGGGTCCATAGGTGGTGAACCAATGAATGGCATCAATTTGAACTACGACCTAATGGATCAGATTCGCAAGGGCAAGATGACACTCGATGCAACGGGGAAAACTACTTCCCTCCTTGAATTCAATGCATTGAATTCTGGTTATGCTACTCAAGGGGTGGCTTCTTCAAGTAGGTTCGCAAGTGCAAACCAATTCCCAACAATGCTTAATAATATTATAATTGAACGACAACCGACACAACTTCCAACATCACCACTACTGCCACCACCACCACCACAACAACAACAACAACAAGATGGTCTTGAAGATGGAGGGTGGGAACTTGATAGTTTGTTTGATCTCATAAACAACACCTCTACTATTGAAAACAACTCGCCCCCTCGACTAGCTAATGAAGATTATCTCAGTGATTTATTCTTCGAGCAGATCGTTCAAGCAGATAATCAGAAACAAGGTTTTGAAGAAGTCGTGGACCCCAAATTGGATATCAGCACATATCAGGTGGATGACAACACTCATTCACTGTAA 1983 0.3984 MDGEVIPEVEPSSTKTFPTGLCVLVVDDNPTCLKILETMLKTCKYEVVAVGQAIDALSLLRERQGGFDLVLTDVHMPYMDGFELLKLIGKEFEIPVIMMSADDKVKVVTKGLESGASFYLLKPITINDVQNLWQYVIRKKIDDMVEMEKKVSVQVASPLDKTLEEDTECASSVNEDKNDYKRKTANEKDKDEEEDKNDSTTHKKARVVWNTELHNQFLDAIDQLGIDKAVPKKILEMMNVPGLTRENVASHLQKYRIFTKRIMEESQSLEPSVARSLTNGALNSIFASDHPSLMCNLQEGYPQFPKEQRTLTSFQPGFGGSIQGHNAPIRMPSIGHGHFLNQEQSASNSIAQVRHGQSLLMHNQGNSYQPLLGTASSFNQQNNVNYMALGMEPHNIRMGSSLHGDISTDLVRGGGTMQMAHQQHQARSGLFDNSLLDQNFSTLSLQGQNNIQNVGNMAPYCNSTNNNHIGIQMISTGGFAGLSNQMGSIGGEPMNGINLNYDLMDQIRKGKMTLDATGKTTSLLEFNALNSGYATQGVASSSRFASANQFPTMLNNIIIERQPTQLPTSPLLPPPPPQQQQQQDGLEDGGWELDSLFDLINNTSTIENNSPPRLANEDYLSDLFFEQIVQADNQKQGFEEVVDPKLDISTYQVDDNTHSL* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00660 660 Pfam Myb-like DNA-binding domain 206 256 IPR001005 -
Eupl08g00660 660 ProSiteProfiles Response regulatory domain profile. 22 137 IPR001789 GO:0000160
Eupl08g00660 660 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 201 260 IPR017930 -
Eupl08g00660 660 MobiDBLite consensus disorder prediction 164 202 - -
Eupl08g00660 660 CDD REC_typeB_ARR-like 23 137 - -
Eupl08g00660 660 NCBIfam myb-like DNA-binding domain, SHAQKYF class 204 258 IPR006447 GO:0003677
Eupl08g00660 660 Pfam Response regulator receiver domain 23 130 IPR001789 GO:0000160
Eupl08g00660 660 PANTHER TWO-COMPONENT RESPONSE REGULATOR 23 367 IPR045279 GO:0009736
Eupl08g00660 660 FunFam Two-component response regulator 200 263 - -
Eupl08g00660 660 SMART REC_2 21 133 IPR001789 GO:0000160
Eupl08g00660 660 MobiDBLite consensus disorder prediction 565 588 - -
Eupl08g00660 660 Gene3D - 200 263 - -
Eupl08g00660 660 SUPERFAMILY CheY-like 19 139 IPR011006 -
Eupl08g00660 660 SUPERFAMILY Homeodomain-like 201 261 IPR009057 -
Eupl08g00660 660 Gene3D - 22 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00660 Eupl-Chr8 13382904 13424591 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00660 12 242 Response Regulator Gene Family AT4G16110 51.037 2.54e-68 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Eupl08g00660 Response_reg 1.1e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00660 - K14491 nnu:104596289 455.677