LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl08g00653	ATGACAAGCCTGAACCGCACAAAATTTTGCCGAATTATCCGTGGGGTAGATGACTCTATTTTAAATGCTGACCTGTTGAGAAATGTTCGCAAAGAGGTCAGTGCGATCAAAGACGAATTAGAGAGCATTCAAGCTCTACTAAGGGATGCGGATGCAAAGGGAGAGAGCGACCAAAGAGTGAAAGCTTGGGTGAAACAAGTACGGGATGTAGCTTATGAAACCGAAGATGTCCTAGATGAGTTCATGCTTCCCCGTAGAAAAAATGGATTCATCATGGGTCTCCTCCAAAAAATCACTCACTTGAAGGAACGGCATGATATAGCCACTCGGATCCAAGATATTAAAATCAGAGTCCAAGAGATATCGAGGAGAAAAGAAATATACCATTTCAATAGCTCACATCAAGACTCAACTTCCACTACTACAAAATCCAAACGGCGTGATCCTCGTGAGGATGCTCTTTTAATCGAAGAAGCTGATCTTGTGGGTATCAACAAACCTAGAAAAGAGTTGATTGATTGGTTAAGGAAGGGAGAATCAACACTTGGTGTCCTCTCCGTTTATGGGGCGGGTGGTATGGGCAAGACCACTCTTGTCAAGAAAGTGTATGACATCAAGACGGTTAAGGATCACTTCCCTTACCGTGCTTTGATTGTTGTGTCACAATCGTTCGAAATAAAAAACCTCTTACTAGACTTGATAAACCAGCTCATGGATGCACAGGTGAAAAAGGCACTTCTTCCAGAAGAAATGATCAATACCATGGAAGGCACCAAGCTAAAGGAGACACTCAAAAACTATTTACAAGAAAAGAGGTATGTTGTTGTTCTTGACGATATATGGACCATAGATGCATGGAAAACCATAAAACATACATTTCCTGATAGTGGATGTGGTAGTAGGATAATAATAACAACCCGTGACCATGACGTAGCTCATGCATGCCTAGAAAATTATGGTCATCCCTACGAACTTCAACCCCTAGGACAAGATGATGCTTTGAAGCTCTTTTGCAATAAGGCATTCAAATCATATGACGAGAACAATTGTCCAGAACATTTGAAAGAAATTTCTCAGAAATTCTTAAAGAGGTGTGGAGGGTTGCCGCTTGCAATTGTCGCCATAGCTGGCCTTCTGATCATTAAGAAGACTACAGAGTGGGATCAAGTATATCGGAACCTTGGTTCACTGTTAGCACATAACCCCCTTCTTAGTGATGTACAAATGGTATTATCACTAAGTTACAATGAATTGCCCTACCACTTGAAGTCTTGTTTCCTCTATTTTTGTATTTTTCCCGAGGATTACTCAATCAAGTGTTCAAGATTGCTTCGGTTGTGGGTTGCCGAAGGTTTTGTTCAAAAACAGCCTGAGGCGAGCATGACAATGGAAGAAGTGGCAGCGGGTTACCTTGACGAGCTCATCACAAGGAGCTTAGTTCAAGTAGGACATATGGATTTATGTGGAAGGGTGAGGACATGTACAATTCATGACCTTATGCGTGAGATCATCCTGTTGAAGGCCCATGAACAGAATTTTGTTGAAGTCTTTGTTGAGCGGAATGACACAGAATCTTCTGGTGACAGGACTCGACGCCTCTCAATCCATGCTAATGATGCGGAGAATATGCTACACAACATGAGCTTCTCCCATCCTCGGTCGTTATTTGTGTTTGGAAAAATATTATTTTTCAGCAATTCTTTTTGTACTCATAGCTTCAGGCTTTTGAAAGTCTTGGACCTAGAAGATGCATATGTTGTGGACAAATTTCTAAGTGAACTTGTAAATCTGTTACATTTGAGGTATTTAAGTCTAAGGAAGACATGTATAAGATCTCTACCGAATTCCTTTGGAAAGCTTAAAAATCTAGAGACGTTGGTCCTCGGAGGCACCTTCATATCTGAGTTGCCAGTGGAAATTCTCAAGCTCCAACACCTGCGCCATCTCCTTGTTGGTCAAGAATCCCATAGAGGTGTGAGATTGCCTACAGGGATCAGCAGTTCAACTACCTTAGAAAAACTTTCAATTGTTGATGCAGGCGAAGGGAGTGGTGTAATTGAAGAGCTAGGGATGTTGACCCGATTGAGGAGACTAAGCATTATCAACCTGAGAAAGGAAGATGGGATGAATTTGTGTGCCTCTATTGAGAAGATGAAGTACTTGCGATCCTTCCATTTGTGCTTCGAGGAGGGAGGGTTTCCAAGACTCAAGAGACTTGAACTCATTAGATTGCATGGATTGAATCTGGTGATAGTGGAGGAAGGAGCGATGCCTTTAATTCAAGAGATACAATTTGCAACTTGTGAGAATTTAGAGAATGTGCCTTTCGGCATCGAACACCTCACTAGCCTCGAAGTCATCAAGTTGATTGGTCTCAAAAAGGCACTTTTGCCCAATCTCAATGGCATCTTAAGTAGGAAGAAGAACCAGGATGATGGCTCGTCTCTGTCTTGTCTCCTTGGTGAAAAACTCATGTGA	2478	0.4193	MTSLNRTKFCRIIRGVDDSILNADLLRNVRKEVSAIKDELESIQALLRDADAKGESDQRVKAWVKQVRDVAYETEDVLDEFMLPRRKNGFIMGLLQKITHLKERHDIATRIQDIKIRVQEISRRKEIYHFNSSHQDSTSTTTKSKRRDPREDALLIEEADLVGINKPRKELIDWLRKGESTLGVLSVYGAGGMGKTTLVKKVYDIKTVKDHFPYRALIVVSQSFEIKNLLLDLINQLMDAQVKKALLPEEMINTMEGTKLKETLKNYLQEKRYVVVLDDIWTIDAWKTIKHTFPDSGCGSRIIITTRDHDVAHACLENYGHPYELQPLGQDDALKLFCNKAFKSYDENNCPEHLKEISQKFLKRCGGLPLAIVAIAGLLIIKKTTEWDQVYRNLGSLLAHNPLLSDVQMVLSLSYNELPYHLKSCFLYFCIFPEDYSIKCSRLLRLWVAEGFVQKQPEASMTMEEVAAGYLDELITRSLVQVGHMDLCGRVRTCTIHDLMREIILLKAHEQNFVEVFVERNDTESSGDRTRRLSIHANDAENMLHNMSFSHPRSLFVFGKILFFSNSFCTHSFRLLKVLDLEDAYVVDKFLSELVNLLHLRYLSLRKTCIRSLPNSFGKLKNLETLVLGGTFISELPVEILKLQHLRHLLVGQESHRGVRLPTGISSSTTLEKLSIVDAGEGSGVIEELGMLTRLRRLSIINLRKEDGMNLCASIEKMKYLRSFHLCFEEGGFPRLKRLELIRLHGLNLVIVEEGAMPLIQEIQFATCENLENVPFGIEHLTSLEVIKLIGLKKALLPNLNGILSRKKNQDDGSSLSCLLGEKLM*	826

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl08g00653	825	CDD	RX-CC_like	20	123	IPR038005	-
	Eupl08g00653	825	Gene3D	-	415	507	IPR036388	-
	Eupl08g00653	825	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	145	429	IPR027417	-
	Eupl08g00653	825	FunFam	Probable disease resistance protein At1g63360	415	506	-	-
	Eupl08g00653	825	PRINTS	Disease resistance protein signature	365	379	-	-
	Eupl08g00653	825	PRINTS	Disease resistance protein signature	184	199	-	-
	Eupl08g00653	825	PRINTS	Disease resistance protein signature	267	281	-	-
	Eupl08g00653	825	PRINTS	Disease resistance protein signature	571	587	-	-
	Eupl08g00653	825	Gene3D	-	150	319	IPR027417	-
	Eupl08g00653	825	Pfam	NB-ARC domain	169	416	IPR002182	GO:0043531
	Eupl08g00653	825	Gene3D	-	19	108	-	-
	Eupl08g00653	825	Gene3D	Ribonuclease Inhibitor	564	805	IPR032675	-
	Eupl08g00653	825	Pfam	Rx N-terminal domain	23	87	IPR041118	-
	Eupl08g00653	825	Gene3D	-	328	414	IPR042197	-
	Eupl08g00653	825	PANTHER	DISEASE RESISTANCE PROTEIN RP	33	799	IPR044974	GO:0006952
	Eupl08g00653	825	Coils	Coil	26	53	-	-
	Eupl08g00653	825	FunFam	Probable disease resistance protein At1g61300	144	318	-	-
	Eupl08g00653	825	MobiDBLite	consensus disorder prediction	129	149	-	-
	Eupl08g00653	825	SUPERFAMILY	L domain-like	496	793	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl08g00653	Eupl-Chr8	13227958	13238957	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl08g00653	162	383	WRKY Transcription Factor Family	AT5G45050	28.634	8.19e-11	63.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl08g00653	K13457		-	pda:103721264	603.594