Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00645 ATGGCGTCTGCAACTTTCCATCTCTCAACTCCTCTCAGCCATTTCAAACCTCCAAAACAACCCTCACAGAGAATCACCAAAACCGGATTCTCTCAGTTCTCTCCGAGCACTTCGCGCCAGCGGTTGAAGCTCTTCTCGCCAAATCCACTATATTTCCCACCACATTTTTCCAGAACTGGAAAGAAATTGAACATTGTTAGATCTGCTTACGTATCTGCCCCAGCTTCTGATCCGAATATCAGCGACGAAACCCCGAAAATAGAGGAATTGGATTCTCCGAGGACCGTTCAATCTTCGACTCCAATAGGTTGGGGTCTTGTTTGGAGCCTTTTGCTTCGGCACAAGTTACGGCTCGCGGTTTCAATCATCACTCTCATTGGAGGCACCACTTGCACTCTTTCGATGCCCATCTTTTCGGGGCGATTTTTTGAAGTACTCATAGGGGTGAGACCAGAGCCTTTATGGAAATTGCTTAGTAAGGTTGGAGTGCTGTATTTTCTGGAGCCAATTTTCACTATTATTTTTGTTATAAATATGAGTACCATCTGGGAGAATGTGATGACTGCCTTAAGAGCCCGGGTTTTTAGAAGAATATTAATTCAAAAGGTGGAGTTTTTTGACCGATATAAGGTTGGCGAACTGACTGGCTTGTTGACATCTGATTTGGGTTCTCTAAAAGATGTTGTGAGTGAAAACATTTCAAGGGATCGTGGTTTTAGAGCACTTTCTGAGGTTCTAGGAACAATATGCATACTTTTCGCACTGTCACCCCAACTTGCTCCAATTCTGGGGTTACTGATGCTTTCTGTGTCTGTTTTAGTAGCTATATACAAGCGGTCAACTGTACCTGTCTTCAAAGCGCACGGGATGGCCCAAGCATCTATATCTGATTGTGCAAATGAAACATTTTCAGCCATTCGTACAGTAAGGTCCTTTGGTGGTGAAAAGCATCAAATGACAATGTTTGCTAATCAGGTTTTAGCTTACCAGACTAGTGGCATAAAACTGGGAACTTTCAAGTCCGCAAATGAAGCCCTGACTAGAGTTGTGGTCTATATTTCTTTGCTGGCTTTATATTGTCTTGGTGGAAGCAAAGTGAAGGCGGGTGAACTATCCATTGGAACTGTGGCTTCTTTTATTGGATACACCTTCACATTAACTTTTGCTGTTCAAGGGCTGGTAAACACATTTGGTGATCTTCGTGGAAGTCTTGCTGCAATTGAACGGATTAATGCTTTTTTATCTGGGACAGAAATTGATGAGTCCCTTGCTTATGGTTTAGAAAGAGAACTCAGTAAAAAAGAAGTGGATGATGACAATATTGGATTACTCTACACTGATGGCTCTACCGAGAAAAATTTAGGTCTAAATATGCATTACATGTCAGCCTTGAAATCTGCCAGCAATGGGTGTAGTGTAGCTTGGTCTGGTGACATTTGTCTTGAAGATGTGCACTTCTCTTATCCTTTGAGACCTGATGTGGAAATCCTAAATGGTCTTAGCCTAACGCTTAAATGTGGAACAGTAACAGCTCTCGTGGGTCCTAGTGGTGCAGGAAAAAGTACAATCGTACAGCTATTGGCACGCTTCTACGAGCCAACCAGTGGTCGTATAACAGTATCAGGAGAGGATGTCCGAACATTTGATAAGAGTGAATGGGCTCGTGTTGTCTCCATAGTGAACCAGGAACCTGTCCTATTCTCGGTGTCTGTTGGAGAAAATATTGCATATGGATTGCCGGATGATAATGTCTCCAAAGAAGATGTCATAAAGGCAGCCAAAGCTGCCAATGCTCACGAATTCATAATTTCCCTTCCACAGGGTTATGACACACTAGTTGGTGAACGTGGAAGCCTACTGAGTGGAGGACAGAGGCAGAGAATCGCTATTGCCAGAGCACTGCTAAAAAATGCTCCAATTCTGATACTTGATGAGGCCACTAGTGCTTTAGACGCAATTAGTGAGCGCCTGGTCCAGGAGGCTCTTAACCATCTGATGAGCGGGAGGACCACGTTAGTGATCGCACATAGATTGAGCACTGTCCAGAATGCACACCAAATTGCTGTTTGTTCCGATGGAAAGATTGCAGAGCTAGGCACCCACTTTGAATTGTTGGCTAGGAAGGGTCAATATGCTTCGTTGGTTGGGACTCAAAGGCTTGCATTTGAGTGA 2172 0.4378 MASATFHLSTPLSHFKPPKQPSQRITKTGFSQFSPSTSRQRLKLFSPNPLYFPPHFSRTGKKLNIVRSAYVSAPASDPNISDETPKIEELDSPRTVQSSTPIGWGLVWSLLLRHKLRLAVSIITLIGGTTCTLSMPIFSGRFFEVLIGVRPEPLWKLLSKVGVLYFLEPIFTIIFVINMSTIWENVMTALRARVFRRILIQKVEFFDRYKVGELTGLLTSDLGSLKDVVSENISRDRGFRALSEVLGTICILFALSPQLAPILGLLMLSVSVLVAIYKRSTVPVFKAHGMAQASISDCANETFSAIRTVRSFGGEKHQMTMFANQVLAYQTSGIKLGTFKSANEALTRVVVYISLLALYCLGGSKVKAGELSIGTVASFIGYTFTLTFAVQGLVNTFGDLRGSLAAIERINAFLSGTEIDESLAYGLERELSKKEVDDDNIGLLYTDGSTEKNLGLNMHYMSALKSASNGCSVAWSGDICLEDVHFSYPLRPDVEILNGLSLTLKCGTVTALVGPSGAGKSTIVQLLARFYEPTSGRITVSGEDVRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDDNVSKEDVIKAAKAANAHEFIISLPQGYDTLVGERGSLLSGGQRQRIAIARALLKNAPILILDEATSALDAISERLVQEALNHLMSGRTTLVIAHRLSTVQNAHQIAVCSDGKIAELGTHFELLARKGQYASLVGTQRLAFE* 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00645 723 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 479 717 IPR003439 GO:0005524
Eupl08g00645 723 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 69 721 IPR039421 -
Eupl08g00645 723 SMART AAA_5 506 700 IPR003593 GO:0016887
Eupl08g00645 723 ProSitePatterns ABC transporters family signature. 620 634 IPR017871 GO:0005524|GO:0016887
Eupl08g00645 723 Pfam ABC transporter transmembrane region 119 389 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Eupl08g00645 723 SUPERFAMILY ABC transporter transmembrane region 107 418 IPR036640 GO:0005524|GO:0016020
Eupl08g00645 723 MobiDBLite consensus disorder prediction 1 34 - -
Eupl08g00645 723 CDD ABC_MTABC3_MDL1_MDL2 479 718 - -
Eupl08g00645 723 Gene3D ABC transporter type 1, transmembrane domain 105 421 IPR036640 GO:0005524|GO:0016020
Eupl08g00645 723 Gene3D - 477 720 IPR027417 -
Eupl08g00645 723 Pfam ABC transporter 497 648 IPR003439 GO:0005524
Eupl08g00645 723 FunFam ATP-binding cassette sub-family B member 8, mitochondrial 477 721 - -
Eupl08g00645 723 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 473 718 IPR027417 -
Eupl08g00645 723 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 119 402 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Eupl08g00645 723 CDD ABC_6TM_TAP_ABCB8_10_like 122 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00645 Eupl-Chr8 13075557 13091262 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00645 476 723 Calmodulin-binding Proteins AT2G36910 55.556 7.15e-77 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00645 K05657 - nnu:104596190 1142.1