Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00640 ATGGATGTCGACAATGGAGGTAAGAGAGTGTTTAATCGGTTAGGAGCGGCAGGAAATGAGAAATCACAGAAAGTATGTTATCACTGGCGAGCAGGGAGATGCAACAGGTACCCCTGCCAGTACCTGCACAGCGAATTGCCACAGCAGAGCGGCAATTTAATGCCATCGAAGCGGTCTCATGGCTTACCCGATTCAGGGAATTTCTCTGGTTCTCATACATTTACACGCACTAACCCTAACCCTAACCCTAACCTGCAATTGTCTTCGAAATGGGGCCGGGGTCATGGCGGGGTAGGAGGTGGTGGAGGAGTATCTAGGATTCCTCAGAAGAGTCAGGACAAGCCTTGCCACTATTGGTTGGCGGGCAAGTGCAGTTACGGGGACAGGTGCAAGTTTCTGCATTCTTGGTTCATGAGCGATAGTTTCTCATTGTTGACTCAGCTTGCAGGGCACGAGAAGGTAATTAGTGGAATCGCTTTTCCTTCGGGGTCTGATAAACTGTACTCTGGAAGTAAAGATGAATCTGTACGTGTTTGGGATTGTCAGACTGGCCAGTGTGCTGGTGTGATTAATCTGGGAGGTGAAATTGGCTGTATGATAAGTGAAGGTCCATGGATTTTTGTTGGAATTCCAAATGTTGTTAAGGCGTGGAACACCCAAACGAACACTGATCTCAGCCTTAGTGGTCCCATCGGACAAGTTTATTCCCTGGTTGTGGGTAATGAAATGCTTTTTGCCGGAACTCAGGACGGTAGTATATTGGTTTGGAGATTTATTGCCGTAACCAATTGCTTCGAACCAGCCGCCTCTCTTAAGGGGCATAGTCTTTCTGTTGTTTCATTAGTTGTTGGAGCTAATAGGATGTACTCTGGATCCATGGACAATACAATCAGAGTGTGGGACCTTGAGACTTTACAGTGTATTCAGACTCTGACAGACCACACTTCAGTTGTAATGTCTGTCCTTTGCTGGGACCAATTCTTATTATCATGTTCGTTGGACCAAACAATAAAGGTGTGGGTTGCCACGGAGAGTGGGAACTTGGGAGTAACATATACGCACAAAGAAGAACATGGTGTGCTTGCGCTCTGCGGCATGCATGATGCACAAGCCAAGCCTGTGTTGCTGTGCTCATGCAATGACAACACCGTTCATCTCTTTGACTTACCATCATTTAATGAGCGGGGAAAGATATTCTCTAGGGAGGAGATTCGGGCTATACAGATTGGTCCAGGCGGGTTATTTTTTACGGGTGATGGAACCGGCGAACTTAAAGTGTGGAAGTGGTCTGAATCAACAGCAACCACTTGA 1311 0.4691 MDVDNGGKRVFNRLGAAGNEKSQKVCYHWRAGRCNRYPCQYLHSELPQQSGNLMPSKRSHGLPDSGNFSGSHTFTRTNPNPNPNLQLSSKWGRGHGGVGGGGGVSRIPQKSQDKPCHYWLAGKCSYGDRCKFLHSWFMSDSFSLLTQLAGHEKVISGIAFPSGSDKLYSGSKDESVRVWDCQTGQCAGVINLGGEIGCMISEGPWIFVGIPNVVKAWNTQTNTDLSLSGPIGQVYSLVVGNEMLFAGTQDGSILVWRFIAVTNCFEPAASLKGHSLSVVSLVVGANRMYSGSMDNTIRVWDLETLQCIQTLTDHTSVVMSVLCWDQFLLSCSLDQTIKVWVATESGNLGVTYTHKEEHGVLALCGMHDAQAKPVLLCSCNDNTVHLFDLPSFNERGKIFSREEIRAIQIGPGGLFFTGDGTGELKVWKWSESTATT* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00640 436 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 148 180 - -
Eupl08g00640 436 ProSitePatterns Trp-Asp (WD) repeats signature. 288 302 IPR019775 -
Eupl08g00640 436 ProSiteProfiles Zinc finger C3H1-type profile. 20 46 IPR000571 GO:0046872
Eupl08g00640 436 SUPERFAMILY CCCH zinc finger 111 135 IPR036855 GO:0046872
Eupl08g00640 436 PRINTS G protein beta WD-40 repeat signature 167 181 IPR020472 -
Eupl08g00640 436 PRINTS G protein beta WD-40 repeat signature 288 302 IPR020472 -
Eupl08g00640 436 PRINTS G protein beta WD-40 repeat signature 328 342 IPR020472 -
Eupl08g00640 436 MobiDBLite consensus disorder prediction 52 84 - -
Eupl08g00640 436 Pfam WD domain, G-beta repeat 144 180 IPR001680 GO:0005515
Eupl08g00640 436 Pfam WD domain, G-beta repeat 306 340 IPR001680 GO:0005515
Eupl08g00640 436 Pfam WD domain, G-beta repeat 268 301 IPR001680 GO:0005515
Eupl08g00640 436 Gene3D - 232 436 IPR015943 GO:0005515
Eupl08g00640 436 SUPERFAMILY WD40 repeat-like 141 431 IPR036322 GO:0005515
Eupl08g00640 436 Gene3D - 140 225 IPR015943 GO:0005515
Eupl08g00640 436 Gene3D - 104 139 - -
Eupl08g00640 436 ProSiteProfiles Trp-Asp (WD) repeats profile. 148 189 IPR001680 GO:0005515
Eupl08g00640 436 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 114 135 IPR000571 GO:0046872
Eupl08g00640 436 SMART c3hfinal6 110 136 IPR000571 GO:0046872
Eupl08g00640 436 SMART c3hfinal6 21 45 IPR000571 GO:0046872
Eupl08g00640 436 FunFam Zinc finger CCCH domain-containing protein 48 136 226 - -
Eupl08g00640 436 PANTHER - 109 433 IPR044715 -
Eupl08g00640 436 ProSiteProfiles Zinc finger C3H1-type profile. 110 137 IPR000571 GO:0046872
Eupl08g00640 436 SMART WD40_4 264 301 IPR001680 GO:0005515
Eupl08g00640 436 SMART WD40_4 141 180 IPR001680 GO:0005515
Eupl08g00640 436 SMART WD40_4 345 388 IPR001680 GO:0005515
Eupl08g00640 436 SMART WD40_4 220 257 IPR001680 GO:0005515
Eupl08g00640 436 SMART WD40_4 304 341 IPR001680 GO:0005515
Eupl08g00640 436 SMART WD40_4 391 428 IPR001680 GO:0005515
Eupl08g00640 436 FunFam Zinc finger CCCH domain-containing protein 48 228 436 - -
Eupl08g00640 436 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 271 304 - -
Eupl08g00640 436 ProSiteProfiles Trp-Asp (WD) repeats profile. 271 310 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00640 241 427 Miscellaneous Gene Families AT5G08390 27.979 7.46e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Eupl08g00640 WD40 0.00013 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00640 - - nnu:104612682 691.419