Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00629 ATGTCATTCAGTGGGACTCTGCAGAAGTGCAAGGCATGCGATAAGACTGTGTATGTTGTTGATTTGTTGTCCGCAGACGGAATCGACTATCATAAGGCCTGCTTCAAATGCAGCCATTGCAAAGGAACACTTGTGTTGAGTAACTACTCCTCCATGGATGGGGTCCTCTACTGCAAACCTCATTTTGAGCAACTCTTCAAGGAGACTGGTAGTTTTACCAAGAATTTTCAAACAGCTGGGAGGTCTTCTCATGAGAGGCTAAATGAGCTGAGTAGGACCCCTAGCAAACTCTGCTCCATGTTCTCTGGGACCCAAGACAAATGTGCCACTTGTCACAAAACAGCTTACCCACTGGAGAAGGTGACTGTGGAGGAAAAATCATACCATAAGTCATGTTTCAAGTGTTCTCATGGAGGGTGCTCCCTTACACCTTCATCCTATGCTGCTCTGGATGGAATCCTCTACTGTAAGCACCATTTTGCTCAGTTGTTCAAAGAGAAGGGGAGCTACAATCACCTCATCCAGACAGCTACGATTAAGCGCAATGCAGTACTGGTACCAGAACCTAAACCTAATGAAGAACCAGAACCAGACCACACATAG 603 0.4594 MSFSGTLQKCKACDKTVYVVDLLSADGIDYHKACFKCSHCKGTLVLSNYSSMDGVLYCKPHFEQLFKETGSFTKNFQTAGRSSHERLNELSRTPSKLCSMFSGTQDKCATCHKTAYPLEKVTVEEKSYHKSCFKCSHGGCSLTPSSYAALDGILYCKHHFAQLFKEKGSYNHLIQTATIKRNAVLVPEPKPNEEPEPDHT* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00629 200 Gene3D Cysteine Rich Protein 102 172 - -
Eupl08g00629 200 Gene3D Cysteine Rich Protein 5 72 - -
Eupl08g00629 200 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 134 173 - -
Eupl08g00629 200 ProSiteProfiles LIM domain profile. 106 166 IPR001781 -
Eupl08g00629 200 PANTHER OS06G0237300 PROTEIN 6 104 - -
Eupl08g00629 200 FunFam LIM domain and actin-binding 1 4 74 - -
Eupl08g00629 200 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Eupl08g00629 200 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Eupl08g00629 200 FunFam LIM domain and actin-binding 1 102 172 - -
Eupl08g00629 200 Pfam LIM domain 10 65 IPR001781 -
Eupl08g00629 200 Pfam LIM domain 108 163 IPR001781 -
Eupl08g00629 200 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Eupl08g00629 200 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 100 133 - -
Eupl08g00629 200 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Eupl08g00629 200 SMART lim_4 9 61 IPR001781 -
Eupl08g00629 200 SMART lim_4 107 159 IPR001781 -
Eupl08g00629 200 CDD LIM1_SF3 6 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00629 Eupl-Chr8 12614408 12616894 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Eupl08g00629 LIM 1.5e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00629 K09377 - msin:131230953 343.199