Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00625 ATGTTTTCGCAGTTCAGACTAGAAAAGAAAAGGGAATCCCACGAGGAGAAATTGTTCATCGAGAACGGAGGCCGGTTATTAGAAAAGCTGATCAAATCTTGTGACCGGAAATATAATCCGTTCCGGATTTTCTCTAAAGAAGAGCTCCAAAGGGCAACCAACAACTACGACCCACACCGAATTTCTCACAAGGAGGGCTTCTATGTTTTGTACAAGGGAAATCATGAAGACCGCAACGTTTTCGTTAAAAAGTTTAAAGAGAACGAAGTTGAAAATGTTGTTGAATGGTGTATAAATGAAGTCGCAATTGCATCACAGATGAACAACCACAAGAACTTTTTGAAGCTCTTGGGCTGCTGCTTAGAGACCGAAATCCCTGTACTGGTGTATGAGTTTGCTGGCAACGGAAATCTCTCAAATTATATCCATGGATATAAGAAGAATTCAGAAAATCCTACACCACCATTATCATGGGAGAGGAAGTTAAGGATCGCAACCGAGATTGCTGATGCAGTTGCCTATCTACACACCGCCGTTTCCAAGCCCATTATCCATAGAGACATAAAATCCAGAAATATTTTCCTGGATGAACAATATGGTGTCAGATTATTTGATTTGTCTTTCTGTGTTTCTATACCTTTTGGTGAAACATATGTAGAAGTGGAATTCGCAGGAACTCCTGGTTTCGTTCCTCACGAAATCTTACTGACAGGGCGGATTACAGAAAAGAGTGATGTTTATAGCTTTGGGGCTGTATTACTTGAGATTTTTACTGAAAAAAGGGCTTATCAGTTAGCCCTTGCGTTTGAAAAGAGTGAGGGAAATTCCATGTCGAATGGTAGTTCCAATTTAGTTGTGGGCGAGGAGCATTCCGTTCAGTCCTGGGAAATGTTTGTTGATCAGTTTTTGAAGGCGAACACAATAAGAGAAGGAAACACGGAGCAGTTGATGGCATGTTTAGAGCTTGCCTTGAGATGCCTCAAAAGAGAGCAACCTGAGGAAAGGCCATCGATGAAGTCAATCGCACAAGAACTCAGGCGGATAAAAAAAGATGAACAACCACAAGAATTTTTGAAGCTCTTGGGCTGCTGCTTAGAGACCCAAGTCCCTGAATCGGTGTTTGAATTTGCTGAGAATGGAAATCTCTCCGATCATATCCATAAGAAGAACGATTCAGAAAACAATCCACCGCTATTATCTTGGGAAAGGAAGTTAAGGATCGCAACCGAGATTGCTGACGCAATAGCTGGGACCGTGGGTTTCATTGCTTCGGAGATCATTTCTACAAATCGAGTTACAGAGAAGAGCGATGTTTATAGTTTTGGGAGTGTATTGTTTGAAATATTAACTGGAAAGAAGATTAATGAAGTATGGATTGTTGAGTCAGATCAGAGTGAAGGCAATTCGATATCGAGCAGTCGTTCAAGTTCGGTTAGAGAGGATGAGAAGGATGGCATTAGGTTTGTCAGGGAAATGAATTTTGAACAGTATTTGAAGGCCAACATGTTGAAAGAAGGAACCACAGAGCAGCAGATGGCATGTGCAGAGCTTATTATGAGATGCATGAAAAAAGAGAATCCTGAGGATAGGCCGACAATGAAGTCAGTAGCACAAGAGCTGAGGCGGATCAAAAGGTTAGAGCCTACTTCATCTTCCTTTCAGACGCTAACAGACTCTGTAACACATTATCCACTGGGGACTTAG 1704 0.4167 MFSQFRLEKKRESHEEKLFIENGGRLLEKLIKSCDRKYNPFRIFSKEELQRATNNYDPHRISHKEGFYVLYKGNHEDRNVFVKKFKENEVENVVEWCINEVAIASQMNNHKNFLKLLGCCLETEIPVLVYEFAGNGNLSNYIHGYKKNSENPTPPLSWERKLRIATEIADAVAYLHTAVSKPIIHRDIKSRNIFLDEQYGVRLFDLSFCVSIPFGETYVEVEFAGTPGFVPHEILLTGRITEKSDVYSFGAVLLEIFTEKRAYQLALAFEKSEGNSMSNGSSNLVVGEEHSVQSWEMFVDQFLKANTIREGNTEQLMACLELALRCLKREQPEERPSMKSIAQELRRIKKDEQPQEFLKLLGCCLETQVPESVFEFAENGNLSDHIHKKNDSENNPPLLSWERKLRIATEIADAIAGTVGFIASEIISTNRVTEKSDVYSFGSVLFEILTGKKINEVWIVESDQSEGNSISSSRSSSVREDEKDGIRFVREMNFEQYLKANMLKEGTTEQQMACAELIMRCMKKENPEDRPTMKSVAQELRRIKRLEPTSSSFQTLTDSVTHYPLGT* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00625 567 SMART serkin_6 56 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl08g00625 567 Pfam Protein tyrosine and serine/threonine kinase 72 259 IPR001245 GO:0004672|GO:0006468
Eupl08g00625 567 Gene3D Phosphorylase Kinase; domain 1 31 132 - -
Eupl08g00625 567 Gene3D Transferase(Phosphotransferase) domain 1 416 551 - -
Eupl08g00625 567 SUPERFAMILY Protein kinase-like (PK-like) 292 551 IPR011009 -
Eupl08g00625 567 SUPERFAMILY Protein kinase-like (PK-like) 47 352 IPR011009 -
Eupl08g00625 567 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672|GO:0006468
Eupl08g00625 567 Gene3D Transferase(Phosphotransferase) domain 1 134 357 - -
Eupl08g00625 567 ProSiteProfiles Protein kinase domain profile. 56 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl08g00625 567 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 415 545 IPR045274 GO:0007166
Eupl08g00625 567 Gene3D Transferase(Phosphotransferase) domain 1 358 415 - -
Eupl08g00625 567 Pfam Protein kinase domain 412 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00625 Eupl-Chr8 12298917 12305759 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00625 355 544 Receptor kinase-like Gene Family AT1G16120 29.046 1.05e-20 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Eupl08g00625 PK_Tyr_Ser-Thr 6.1e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00625 - - ming:122061088 325.094