Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00622 ATGAATACACGAGGTAGGTATCCTCCGGGGATCGGCAATGGTCGCGGTGGAAATTTTAACTCAAACCCTAATTTTCAAGCTAGAAATTCTCAACAACAGTACGTGCAGAGGAATTCTGTGCAAAATCAGCAGCAGTTTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAATGGCTGAGAAGGAATTCAATGGGTGCTGATTCCGGTGCTAATGAAGTTGTGAAAGTAGTACAGTCGGAAACCTTTGATTCAAGTTCTCAAGATTGGAAGGCCCGGCTAAAGATACCACCAAGTGATACACGTTATAGGACAGAGGATGTGACTGCCACTAAAGGAAATGAATTTGAGGATTATTTTCTGAAACGCGAGCTGCTTATGGGAATATATGAGAAGGGGTTTGAAAGACCTTCTCCCATCCAGGAAGAAAGCATTCCAATTGCTTTAACTGGAAGTGATATTCTTGCTAGAGCTAAAAATGGGACAGGAAAGACAGCTGCCTTTTGCATTCCTGCATTGGAAAAAATTGATCAAGATAACCATGTCATTCAAGTTGTTATACTGGTTCCAACACGAGAATTGGCGCTTCAGACATCACAAGTCTGTAAGGAGCTGGGGAAGCATTTGAAGATTCAAGTTATGGTCACCACAGGAGGAACCAGTCTAAAAGATGATATAATGCGTTTATATCAACCCGTACATTTGCTTGTTGGAACTCCAGGAAGAATTCTTGATCTCGCAAAGAAAGGTGTTTGCATCCTGAAAGATTGCTCAATGCTTGTTATGGATGAGGCTGACAAGCTTTTGTCTCCTGAGTTTCAACCTTCAGTGGACCAGCTCATTCGTTTTATGCATGCGAATCGGCAAATTTTGTTGTTTTCAGCGACATTCCCCGTAACTGTGAAGGATTTCAAAGATAGATATCTACACAAGCCGTATGTCATTAATCTGATGGACGAGCTTACTCTCAAGGGTATAACACAATATTATGCTTTTGTAGAAGAAAGACAGAAGGTTCACTGCTTAAATACTCTTTTCTCTAAGCTTCAAATCAACCAGTCGATCATATTTTGCAACTCAGTGAATCGGGTGGAACTGTTGGCAAAGAAAATTACGGAGCTTGGCTATTCTTGCTTCTACATTCACGCTAAAATGTTGCAAGATCATCGTAACCGAGTTTTTCATGACTTTCGTAATGGTGCTTGTAGGAACCTTGTTTGTACAGATTTGTTCACAAGGGGGATTGACATTCAAGCAGTGAATGTGGTTATCAACTTCGATTTCCCTAAGAACTCAGAAACATATCTGCACAGGGTCGGTCGGTCAGGAAGGTTTGGACATCTCGGATTAGCAGTGAATTTGATCACATATGAGGATCGTTTCAATTTGTATAGGATTGAGCAAGAACTTGGGACTGAAATAAAGCAAATTCCTCCACAAATAGACCAGGCTATTTATTGCAGGTGA 1476 0.4173 MNTRGRYPPGIGNGRGGNFNSNPNFQARNSQQQYVQRNSVQNQQQFQQQQQQQQQQQQQQQWLRRNSMGADSGANEVVKVVQSETFDSSSQDWKARLKIPPSDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNHVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCSMLVMDEADKLLSPEFQPSVDQLIRFMHANRQILLFSATFPVTVKDFKDRYLHKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPQIDQAIYCR* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00622 491 SMART helicmild6 368 449 IPR001650 -
Eupl08g00622 491 CDD DEADc_DDX6 119 319 - -
Eupl08g00622 491 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 117 145 IPR014014 GO:0003724
Eupl08g00622 491 Pfam Helicase conserved C-terminal domain 343 449 IPR001650 -
Eupl08g00622 491 MobiDBLite consensus disorder prediction 1 22 - -
Eupl08g00622 491 FunFam ATP-dependent RNA helicase DDX6 98 321 - -
Eupl08g00622 491 FunFam ATP-dependent RNA helicase DDX6 322 491 - -
Eupl08g00622 491 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 264 272 IPR000629 -
Eupl08g00622 491 Gene3D - 323 491 IPR027417 -
Eupl08g00622 491 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 148 318 IPR014001 -
Eupl08g00622 491 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 471 IPR027417 -
Eupl08g00622 491 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 46 490 - -
Eupl08g00622 491 Pfam DEAD/DEAH box helicase 142 306 IPR011545 GO:0003676|GO:0005524
Eupl08g00622 491 CDD SF2_C_DEAD 329 458 - -
Eupl08g00622 491 SMART ultradead3 136 332 IPR014001 -
Eupl08g00622 491 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 328 488 IPR001650 -
Eupl08g00622 491 Gene3D - 101 322 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00622 Eupl-Chr8 12167612 12195883 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00622 119 488 Eukaryotic Initiation Factors Gene Family AT3G19760 37.903 1.04e-92 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00622 K12614 - nnu:104596115 882.863