Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00596 ATGGATGGAAGGGAAGCCATGGCGTTGTCTGGTTCGGCACCTTATTATATGCACAGAGGGGTAGCTGGATCAGGGTCTGGAACACAGACTGGGTTACATGGACCACCGGGCATTCGTCCATTGTCTAATCCGAGTATGCAAGTCCAATCAAATATTGGAGGTAGTTCTGTTGGATCGACATTTGCGGTAGAGCCAACTTCTGCAATTTCACCTCATGGTGTCAATGTCGGTGTGCCAACTGGAATGGCACCCGGTGAACCTGTAAAGAGAAAAAGGGGACGACCCCGGAAATATGGACCTGATGGAACTGTGTCCTTGGCATTGTCTCCCATGTCGACTACTCCTCCAGCAGCGTCGCTCACACCAACCCAGAAGCGGGGTAGAGGGCGGCCACCCGGAACTGGGAGGAAGCAACAATTAGCTTCTCTTGGTGAATGGCTCTCTGGCTCAGCTGGAATGGGTTTTACTCCTCATATCATCACCATTGAAACCGGAGAGGATATCGCAACAAAAATAATGTCATTCTCGCAACAGGGGCCGAGGGCTGTATGCATCCTCTCGGCCAGTGGTGCTGTCTCTACAGTGACGCTTCGTCAGCCTGCAACTTCTGGTGGCACTGTCACATACGAGGGCCGTTTCGAGATATTATGTTTGTCAGGCTCTTACTTGCTCACTGATAATGGGGGATCCCGCAGCCGAAGTGGTGGTCTAAGTGTCTCCCTTTCTAGTCCTGATGGTCGCGTTATCGGTGGTGGGGTTGGGGGAATGCTTATCGCAGCAAGCCCAGTCCAGGTGATAGTGGGGAGTTTTGTGTACGGTGGTTCAAAGACAAAGAACAAAGCATCTGCCGGTGCTGAATCTGGTGCAGACTCTGATCTTCCGACGGGTGATAAGTCTGCCACACCAACCAGTGTTCCACCCATTCAAAATCTAACCCCTACTTCAGCGATGAGTGGGTGGCCTAGTGCAAGGGCAGTGGATATGAGGAACGCCCTCCACATTGATATTGACTTGACTCGTGGATGA 1026 0.5185 MDGREAMALSGSAPYYMHRGVAGSGSGTQTGLHGPPGIRPLSNPSMQVQSNIGGSSVGSTFAVEPTSAISPHGVNVGVPTGMAPGEPVKRKRGRPRKYGPDGTVSLALSPMSTTPPAASLTPTQKRGRGRPPGTGRKQQLASLGEWLSGSAGMGFTPHIITIETGEDIATKIMSFSQQGPRAVCILSASGAVSTVTLRQPATSGGTVTYEGRFEILCLSGSYLLTDNGGSRSRSGGLSVSLSSPDGRVIGGGVGGMLIAASPVQVIVGSFVYGGSKTKNKASAGAESGADSDLPTGDKSATPTSVPPIQNLTPTSAMSGWPSARAVDMRNALHIDIDLTRG* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00596 341 SUPERFAMILY AF0104/ALDC/Ptd012-like 155 272 - -
Eupl08g00596 341 SMART AT_hook_2 125 137 IPR017956 GO:0003677
Eupl08g00596 341 SMART AT_hook_2 89 101 IPR017956 GO:0003677
Eupl08g00596 341 Gene3D - 157 286 - -
Eupl08g00596 341 ProSiteProfiles PPC domain profile profile. 151 303 IPR005175 -
Eupl08g00596 341 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 61 307 IPR039605 GO:0003680
Eupl08g00596 341 MobiDBLite consensus disorder prediction 72 139 - -
Eupl08g00596 341 CDD DUF296 156 226 IPR005175 -
Eupl08g00596 341 MobiDBLite consensus disorder prediction 20 47 - -
Eupl08g00596 341 MobiDBLite consensus disorder prediction 281 320 - -
Eupl08g00596 341 MobiDBLite consensus disorder prediction 294 319 - -
Eupl08g00596 341 FunFam AT-hook motif nuclear-localized protein 1-like 157 287 - -
Eupl08g00596 341 MobiDBLite consensus disorder prediction 106 121 - -
Eupl08g00596 341 Pfam Plants and Prokaryotes Conserved (PCC) domain 157 271 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00596 Eupl-Chr8 11554246 11563116 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00596 1 341 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 46.875 8.66e-90 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00596 - - nnu:104608705 516.924